miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17214 5' -59.4 NC_004333.2 + 45120 1.08 0.000401
Target:  5'- cUGUCUGCGCGGCGAUCGCGCCUACCUg -3'
miRNA:   3'- -ACAGACGCGCCGCUAGCGCGGAUGGA- -5'
17214 5' -59.4 NC_004333.2 + 9355 0.73 0.156652
Target:  5'- cGUCggcGCGCGGCG-UCGgGCCUucuuCCUc -3'
miRNA:   3'- aCAGa--CGCGCCGCuAGCgCGGAu---GGA- -5'
17214 5' -59.4 NC_004333.2 + 44930 0.72 0.174001
Target:  5'- uUGUCgcGCGCGGCGAUCuucuucaGCGUCUcgcgGCCa -3'
miRNA:   3'- -ACAGa-CGCGCCGCUAG-------CGCGGA----UGGa -5'
17214 5' -59.4 NC_004333.2 + 48181 0.72 0.174468
Target:  5'- aUGcCgGCGCGGUGcgCGCGCCcgguUGCCg -3'
miRNA:   3'- -ACaGaCGCGCCGCuaGCGCGG----AUGGa -5'
17214 5' -59.4 NC_004333.2 + 31296 0.72 0.184037
Target:  5'- ----cGCGCGGCcGUCGCGCCggcaugACCa -3'
miRNA:   3'- acagaCGCGCCGcUAGCGCGGa-----UGGa -5'
17214 5' -59.4 NC_004333.2 + 9631 0.71 0.210007
Target:  5'- cGgCUGC-CGGCGG-CGCGCCUGCg- -3'
miRNA:   3'- aCaGACGcGCCGCUaGCGCGGAUGga -5'
17214 5' -59.4 NC_004333.2 + 17539 0.71 0.227062
Target:  5'- cGUgaGCGCGGCGGccuUCGCGUUgcGCCa -3'
miRNA:   3'- aCAgaCGCGCCGCU---AGCGCGGa-UGGa -5'
17214 5' -59.4 NC_004333.2 + 2635 0.71 0.233003
Target:  5'- ----cGCGCGGUucAUCGCGCUUGCCg -3'
miRNA:   3'- acagaCGCGCCGc-UAGCGCGGAUGGa -5'
17214 5' -59.4 NC_004333.2 + 39341 0.7 0.239074
Target:  5'- --cCUGCgaucGCGcGCGcgUGCGCCUGCCg -3'
miRNA:   3'- acaGACG----CGC-CGCuaGCGCGGAUGGa -5'
17214 5' -59.4 NC_004333.2 + 13915 0.7 0.258081
Target:  5'- cGgCUGcCGUGGCGAUCGUGgCCgcUGCCg -3'
miRNA:   3'- aCaGAC-GCGCCGCUAGCGC-GG--AUGGa -5'
17214 5' -59.4 NC_004333.2 + 17079 0.7 0.258081
Target:  5'- aGUCgaGCGCGGCGAcgGCGUaUGCCg -3'
miRNA:   3'- aCAGa-CGCGCCGCUagCGCGgAUGGa -5'
17214 5' -59.4 NC_004333.2 + 2442 0.7 0.271428
Target:  5'- gGUacgGCGCGGCGAacaccugCGCGCCgaacgaaGCCg -3'
miRNA:   3'- aCAga-CGCGCCGCUa------GCGCGGa------UGGa -5'
17214 5' -59.4 NC_004333.2 + 47066 0.7 0.271428
Target:  5'- aGUUUGCGCGcaacgugagcGCGAucuuUCGCGCCgcuCCg -3'
miRNA:   3'- aCAGACGCGC----------CGCU----AGCGCGGau-GGa -5'
17214 5' -59.4 NC_004333.2 + 8987 0.7 0.274163
Target:  5'- ---gUGCGCGGCGGcgaccgacgcggcguUCGCGgCUUGCCa -3'
miRNA:   3'- acagACGCGCCGCU---------------AGCGC-GGAUGGa -5'
17214 5' -59.4 NC_004333.2 + 37122 0.69 0.278307
Target:  5'- cGUCaUGUGC-GCGAUCGCGCUgcuguCCa -3'
miRNA:   3'- aCAG-ACGCGcCGCUAGCGCGGau---GGa -5'
17214 5' -59.4 NC_004333.2 + 36287 0.69 0.278307
Target:  5'- cGUcCUGCGCcauGCGAUaCGCGCCgcCCg -3'
miRNA:   3'- aCA-GACGCGc--CGCUA-GCGCGGauGGa -5'
17214 5' -59.4 NC_004333.2 + 25549 0.69 0.284616
Target:  5'- gGUCaGCGggucgacauUGGCGAUCagcugcgcaaacaGCGCCUGCCa -3'
miRNA:   3'- aCAGaCGC---------GCCGCUAG-------------CGCGGAUGGa -5'
17214 5' -59.4 NC_004333.2 + 5279 0.69 0.285324
Target:  5'- aGUUUGCGaCGGUGccgacgcCGCGCCUGCa- -3'
miRNA:   3'- aCAGACGC-GCCGCua-----GCGCGGAUGga -5'
17214 5' -59.4 NC_004333.2 + 25645 0.69 0.285324
Target:  5'- cGUCaGCGCGGuCGAaaGCGuCUUGCCg -3'
miRNA:   3'- aCAGaCGCGCC-GCUagCGC-GGAUGGa -5'
17214 5' -59.4 NC_004333.2 + 34629 0.69 0.299775
Target:  5'- ---aUGCGCGGCGAUUGUGgucggcaacguuUCUACCg -3'
miRNA:   3'- acagACGCGCCGCUAGCGC------------GGAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.