miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 3' -55.5 NC_004333.2 + 29981 0.67 0.556306
Target:  5'- ---cGCUGCCAcCGGCGCcgaGCGCgaGCAc -3'
miRNA:   3'- uaguCGAUGGU-GUUGCG---UGCGgaCGU- -5'
17215 3' -55.5 NC_004333.2 + 6592 0.67 0.556306
Target:  5'- cAUC-GCcGCCACGGCGCGcCGCCcaGCGc -3'
miRNA:   3'- -UAGuCGaUGGUGUUGCGU-GCGGa-CGU- -5'
17215 3' -55.5 NC_004333.2 + 35472 0.67 0.555194
Target:  5'- cGUCGGC-ACCGuCAACGgGCcggugagcgugccGCCUGCGa -3'
miRNA:   3'- -UAGUCGaUGGU-GUUGCgUG-------------CGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 43435 0.67 0.555194
Target:  5'- gGUCgGGCUgacggacGCgCGCAuCGCGCGCUUGCGc -3'
miRNA:   3'- -UAG-UCGA-------UG-GUGUuGCGUGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 31085 0.67 0.552972
Target:  5'- -gCAGCaGCUGCAGCGCACcuaccgcgcgagcaGCCcGCAa -3'
miRNA:   3'- uaGUCGaUGGUGUUGCGUG--------------CGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 20723 0.67 0.545218
Target:  5'- -gCGGUgAUgACGGCGCGCGCgCUGCc -3'
miRNA:   3'- uaGUCGaUGgUGUUGCGUGCG-GACGu -5'
17215 3' -55.5 NC_004333.2 + 10283 0.67 0.545218
Target:  5'- -gCAGCUuugaugccgacgGCCGCAugcGCGUGCGCgaCUGCAu -3'
miRNA:   3'- uaGUCGA------------UGGUGU---UGCGUGCG--GACGU- -5'
17215 3' -55.5 NC_004333.2 + 21927 0.67 0.534201
Target:  5'- -cCAGCUugUA--GCGCGCGCC-GCGu -3'
miRNA:   3'- uaGUCGAugGUguUGCGUGCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 36273 0.67 0.523265
Target:  5'- -gCAGCgACaCGCGACGUccuGCGCCaUGCGa -3'
miRNA:   3'- uaGUCGaUG-GUGUUGCG---UGCGG-ACGU- -5'
17215 3' -55.5 NC_004333.2 + 31835 0.67 0.523265
Target:  5'- gAUCAGCguguagaGCUGCAGCGgGuuguuUGCCUGCAu -3'
miRNA:   3'- -UAGUCGa------UGGUGUUGCgU-----GCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 44616 0.67 0.512416
Target:  5'- ---cGCUGCCGCcGCGCAUGCaaGCc -3'
miRNA:   3'- uaguCGAUGGUGuUGCGUGCGgaCGu -5'
17215 3' -55.5 NC_004333.2 + 47672 0.67 0.512416
Target:  5'- cUCGGCgACgCGCAGCuGaaugaACGCCUGCGg -3'
miRNA:   3'- uAGUCGaUG-GUGUUG-Cg----UGCGGACGU- -5'
17215 3' -55.5 NC_004333.2 + 15002 0.67 0.512416
Target:  5'- gGUUAGCggGCCGcCGACGCcgACGCC-GCGa -3'
miRNA:   3'- -UAGUCGa-UGGU-GUUGCG--UGCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 45427 0.67 0.512416
Target:  5'- uUCGGCggcgGCgACGGCGCAuuCGCgaGCAu -3'
miRNA:   3'- uAGUCGa---UGgUGUUGCGU--GCGgaCGU- -5'
17215 3' -55.5 NC_004333.2 + 44950 0.67 0.512416
Target:  5'- -gCAGCUAUCcuGCGcGCGCACGUCgGCGg -3'
miRNA:   3'- uaGUCGAUGG--UGU-UGCGUGCGGaCGU- -5'
17215 3' -55.5 NC_004333.2 + 13972 0.67 0.512416
Target:  5'- -gCGGCgGCCGguGCGCGCGagCUGCGc -3'
miRNA:   3'- uaGUCGaUGGUguUGCGUGCg-GACGU- -5'
17215 3' -55.5 NC_004333.2 + 18803 0.68 0.501661
Target:  5'- uAUCGcGCgGCCGCAGgGCGCGUgCUGCu -3'
miRNA:   3'- -UAGU-CGaUGGUGUUgCGUGCG-GACGu -5'
17215 3' -55.5 NC_004333.2 + 37184 0.68 0.501661
Target:  5'- -aCAcGCcGCuCACGACGCGCGCCggUGCc -3'
miRNA:   3'- uaGU-CGaUG-GUGUUGCGUGCGG--ACGu -5'
17215 3' -55.5 NC_004333.2 + 3991 0.68 0.501661
Target:  5'- gGUCGGcCUGCCGCcGCuGC-CGCCUgGCGc -3'
miRNA:   3'- -UAGUC-GAUGGUGuUG-CGuGCGGA-CGU- -5'
17215 3' -55.5 NC_004333.2 + 15430 0.68 0.501661
Target:  5'- uUCGGCguUCAgcGCGCGCGUCUGCGc -3'
miRNA:   3'- uAGUCGauGGUguUGCGUGCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.