miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 5' -53.1 NC_004333.2 + 8562 0.67 0.767581
Target:  5'- -aCGCGGACGUuguggcuggcucGCCG-UCGCGAgGUAc -3'
miRNA:   3'- ccGCGCUUGCA------------CGGCuAGCGCUaUAU- -5'
17215 5' -53.1 NC_004333.2 + 20638 0.67 0.767581
Target:  5'- cGGCGCGAcccgACGcGCCGAcgaUCaGCGGc--- -3'
miRNA:   3'- -CCGCGCU----UGCaCGGCU---AG-CGCUauau -5'
17215 5' -53.1 NC_004333.2 + 28867 0.67 0.746564
Target:  5'- cGGCGCGcucaagcgcuCGUGCCG--CGCGAUc-- -3'
miRNA:   3'- -CCGCGCuu--------GCACGGCuaGCGCUAuau -5'
17215 5' -53.1 NC_004333.2 + 32208 0.67 0.746564
Target:  5'- aGCGCGAugagcACGUcGCCGAgcgucuugagcUCGCGGa--- -3'
miRNA:   3'- cCGCGCU-----UGCA-CGGCU-----------AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 27389 0.67 0.746564
Target:  5'- cGGCGCGAcggcCGUGCCGucauguUUGCcGUAa- -3'
miRNA:   3'- -CCGCGCUu---GCACGGCu-----AGCGcUAUau -5'
17215 5' -53.1 NC_004333.2 + 36211 0.67 0.746564
Target:  5'- aGGCGuUGAAgGUugcGCCGGUCGCGc---- -3'
miRNA:   3'- -CCGC-GCUUgCA---CGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 43300 0.67 0.746564
Target:  5'- cGGCuauGCGcuCGUGCCGAUCGagcCGAc--- -3'
miRNA:   3'- -CCG---CGCuuGCACGGCUAGC---GCUauau -5'
17215 5' -53.1 NC_004333.2 + 12441 0.67 0.743367
Target:  5'- gGGCGCGGGCGggcgcuacggcgcccCCGAccgUCGCGAa--- -3'
miRNA:   3'- -CCGCGCUUGCac-------------GGCU---AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 25431 0.67 0.735867
Target:  5'- cGGCGgccgucacgcCGGGCGUGCCGGUUaCGAc--- -3'
miRNA:   3'- -CCGC----------GCUUGCACGGCUAGcGCUauau -5'
17215 5' -53.1 NC_004333.2 + 20579 0.67 0.735867
Target:  5'- cGGCGCGGcgGCG-GCCGGcaGCGGUu-- -3'
miRNA:   3'- -CCGCGCU--UGCaCGGCUagCGCUAuau -5'
17215 5' -53.1 NC_004333.2 + 774 0.67 0.735867
Target:  5'- cGGCgcucGCGGGCGgcgGCaCGAUCGCGc---- -3'
miRNA:   3'- -CCG----CGCUUGCa--CG-GCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 19495 0.67 0.735867
Target:  5'- cGCGUGAACGUcGCgGGUagCGCGGcGUAg -3'
miRNA:   3'- cCGCGCUUGCA-CGgCUA--GCGCUaUAU- -5'
17215 5' -53.1 NC_004333.2 + 27521 0.67 0.735867
Target:  5'- --aGCGAucgACGUGUCGAUCGCa----- -3'
miRNA:   3'- ccgCGCU---UGCACGGCUAGCGcuauau -5'
17215 5' -53.1 NC_004333.2 + 16439 0.67 0.735867
Target:  5'- aGCGCGAACGUauGCUaaGAUUGCGcgAc- -3'
miRNA:   3'- cCGCGCUUGCA--CGG--CUAGCGCuaUau -5'
17215 5' -53.1 NC_004333.2 + 31115 0.67 0.735867
Target:  5'- cGGCGCGAguuGC-UGCuCGcgCGCGAg--- -3'
miRNA:   3'- -CCGCGCU---UGcACG-GCuaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 9802 0.67 0.725061
Target:  5'- cGGCGCucAUGUcGCCGAcgcggcguuUCGCGAa--- -3'
miRNA:   3'- -CCGCGcuUGCA-CGGCU---------AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 8610 0.67 0.725061
Target:  5'- aGC-CGGGCaUGCCGGUCGCGcUGUu -3'
miRNA:   3'- cCGcGCUUGcACGGCUAGCGCuAUAu -5'
17215 5' -53.1 NC_004333.2 + 8084 0.67 0.714159
Target:  5'- aGGCGacuGGACGacGCUGGUCGCGGc--- -3'
miRNA:   3'- -CCGCg--CUUGCa-CGGCUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 28481 0.68 0.703172
Target:  5'- cGGCGCGAcACGUugCGAUUGCGGc--- -3'
miRNA:   3'- -CCGCGCU-UGCAcgGCUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 39855 0.68 0.692114
Target:  5'- aGCGCGAGCGgcGUCGGUCG-GAUc-- -3'
miRNA:   3'- cCGCGCUUGCa-CGGCUAGCgCUAuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.