miRNA display CGI


Results 21 - 40 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 3' -55.5 NC_004333.2 + 36182 0.67 0.664467
Target:  5'- gCCGucGCCAAccUugCGuACgUGGCuGGCGCGc -3'
miRNA:   3'- -GGC--UGGUU--AugGCuUG-ACCG-CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 2309 0.67 0.653547
Target:  5'- gCCGGCacgcccgcGuuGAACUGGCGGaauGCGa -3'
miRNA:   3'- -GGCUGguua----UggCUUGACCGCCg--CGC- -5'
17217 3' -55.5 NC_004333.2 + 17580 0.67 0.653547
Target:  5'- gCGACCG--GCUGcAGCaGGuCGGUGCGg -3'
miRNA:   3'- gGCUGGUuaUGGC-UUGaCC-GCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 25487 0.67 0.642608
Target:  5'- aCGGCCGccGCCGGcacGCU-GCaGGCGCGc -3'
miRNA:   3'- gGCUGGUuaUGGCU---UGAcCG-CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 9219 0.67 0.632755
Target:  5'- aCCGACUucgcauccaucgcGCCGAAC-GGgGGCGCc -3'
miRNA:   3'- -GGCUGGuua----------UGGCUUGaCCgCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 43488 0.67 0.631659
Target:  5'- cCCGACCcgagcgucUGCCu-GCgcgGGCGGCuGCGg -3'
miRNA:   3'- -GGCUGGuu------AUGGcuUGa--CCGCCG-CGC- -5'
17217 3' -55.5 NC_004333.2 + 24686 0.67 0.631659
Target:  5'- gCCGAUCAacugcAUGCCGAucc-GCGcGCGCGa -3'
miRNA:   3'- -GGCUGGU-----UAUGGCUugacCGC-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 14221 0.67 0.631659
Target:  5'- uUCGACCAG-ACCcauGCgacGGCGuGCGCGc -3'
miRNA:   3'- -GGCUGGUUaUGGcu-UGa--CCGC-CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 25610 0.67 0.631659
Target:  5'- gUCGACCc--GCUGAcCUcGaGCGGCGCGu -3'
miRNA:   3'- -GGCUGGuuaUGGCUuGA-C-CGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 40660 0.67 0.631659
Target:  5'- gCGGCCGA---CGAACUGuuCGGCGCa -3'
miRNA:   3'- gGCUGGUUaugGCUUGACc-GCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 9440 0.67 0.631659
Target:  5'- gCCGuCCGGUucGCCGucCUGcGCaccaGGCGCGg -3'
miRNA:   3'- -GGCuGGUUA--UGGCuuGAC-CG----CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 23092 0.67 0.631659
Target:  5'- gCUGACggCAGUGCa-GGCgGGCGGCGUGu -3'
miRNA:   3'- -GGCUG--GUUAUGgcUUGaCCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 41301 0.67 0.620712
Target:  5'- uUCGACgAG-GCCGAGCUcGCccGGCGCGc -3'
miRNA:   3'- -GGCUGgUUaUGGCUUGAcCG--CCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 10553 0.67 0.620712
Target:  5'- aCGGCCAucgcgcguuUAUCGGGCgcaucgcaGGCGGUGCu -3'
miRNA:   3'- gGCUGGUu--------AUGGCUUGa-------CCGCCGCGc -5'
17217 3' -55.5 NC_004333.2 + 44128 0.67 0.620712
Target:  5'- uCUGACCGAgGCCGGACU--CGGcCGCu -3'
miRNA:   3'- -GGCUGGUUaUGGCUUGAccGCC-GCGc -5'
17217 3' -55.5 NC_004333.2 + 28611 0.67 0.620712
Target:  5'- aCGugCGAUGCCGGgaaugcacGCgu-CGGCGCGc -3'
miRNA:   3'- gGCugGUUAUGGCU--------UGaccGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 17698 0.67 0.620712
Target:  5'- gUCGGCCAcggcACCGGGCgcGGCcGGCGUc -3'
miRNA:   3'- -GGCUGGUua--UGGCUUGa-CCG-CCGCGc -5'
17217 3' -55.5 NC_004333.2 + 28963 0.67 0.620712
Target:  5'- gCCGGCCugcGCCGAGC--GCGaucGCGCGg -3'
miRNA:   3'- -GGCUGGuuaUGGCUUGacCGC---CGCGC- -5'
17217 3' -55.5 NC_004333.2 + 15464 0.67 0.618523
Target:  5'- gUCGAUCGgcgcgcuuggcGUGCCGAgcgcaacagggcuGCUcgcggcggucaccGGCGGCGCGu -3'
miRNA:   3'- -GGCUGGU-----------UAUGGCU-------------UGA-------------CCGCCGCGC- -5'
17217 3' -55.5 NC_004333.2 + 30754 0.67 0.609773
Target:  5'- gCCG-CC---GCCG-GC-GGCGGCGCGa -3'
miRNA:   3'- -GGCuGGuuaUGGCuUGaCCGCCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.