miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17217 5' -54.3 NC_004333.2 + 29783 0.67 0.72538
Target:  5'- aGCUGGcgCGGgUcGUUCGCGAcgacggUCACCGg -3'
miRNA:   3'- -CGGCCa-GCUgGuCAAGUGCU------AGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 28649 0.67 0.714712
Target:  5'- cGCCcaaGUCG-CCGGaUCGCGGUCGCa- -3'
miRNA:   3'- -CGGc--CAGCuGGUCaAGUGCUAGUGgc -5'
17217 5' -54.3 NC_004333.2 + 32731 0.67 0.714712
Target:  5'- aGCCGG-CGAgCAGaacgUCACGcgcagGUCGCUGc -3'
miRNA:   3'- -CGGCCaGCUgGUCa---AGUGC-----UAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 3441 0.67 0.703963
Target:  5'- cGCCGGUCGACauuGUUCcgcuCGAUUgauUCGa -3'
miRNA:   3'- -CGGCCAGCUGgu-CAAGu---GCUAGu--GGC- -5'
17217 5' -54.3 NC_004333.2 + 27809 0.67 0.703963
Target:  5'- cGgCGGcCGACCAGaUUCgcgccGCGAUCGCg- -3'
miRNA:   3'- -CgGCCaGCUGGUC-AAG-----UGCUAGUGgc -5'
17217 5' -54.3 NC_004333.2 + 18990 0.67 0.693143
Target:  5'- cGCCGGg-GGCCAuagCuCGAUCGCCa -3'
miRNA:   3'- -CGGCCagCUGGUcaaGuGCUAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 20814 0.67 0.693143
Target:  5'- aGCCGcGUCGGcgauguCCGGcagCGCGcgCGCCGu -3'
miRNA:   3'- -CGGC-CAGCU------GGUCaa-GUGCuaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 14899 0.68 0.664764
Target:  5'- aCCGaGUCGuACCAGUUUuccaagccguccuggACGAcCGCCGa -3'
miRNA:   3'- cGGC-CAGC-UGGUCAAG---------------UGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 1856 0.68 0.649385
Target:  5'- gGCCGGugUCGugCGGUUC-UGAcgCGCCu -3'
miRNA:   3'- -CGGCC--AGCugGUCAAGuGCUa-GUGGc -5'
17217 5' -54.3 NC_004333.2 + 18656 0.68 0.649385
Target:  5'- cGCCGGUCGuuuguugcacgaACgGGUUCG-GAUuCGCCGc -3'
miRNA:   3'- -CGGCCAGC------------UGgUCAAGUgCUA-GUGGC- -5'
17217 5' -54.3 NC_004333.2 + 13997 0.68 0.649385
Target:  5'- cGCUGG-CGGCagcGgcCACGAUCGCCa -3'
miRNA:   3'- -CGGCCaGCUGgu-CaaGUGCUAGUGGc -5'
17217 5' -54.3 NC_004333.2 + 45207 0.68 0.649385
Target:  5'- uUCGGgCGACgaCAGguaggCGCGAUCGCCGc -3'
miRNA:   3'- cGGCCaGCUG--GUCaa---GUGCUAGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 11806 0.68 0.638379
Target:  5'- uGCCGGUCGgcuGCCGGacaUCGCGcaggaCGCCa -3'
miRNA:   3'- -CGGCCAGC---UGGUCa--AGUGCua---GUGGc -5'
17217 5' -54.3 NC_004333.2 + 9602 0.68 0.637278
Target:  5'- aGCCGGcgcggcaUCGGCCGGUU-GCG--CACCGg -3'
miRNA:   3'- -CGGCC-------AGCUGGUCAAgUGCuaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 39057 0.69 0.605367
Target:  5'- aGCCGGaCGGCgAGUacgCGCGAcucgugCGCCGu -3'
miRNA:   3'- -CGGCCaGCUGgUCAa--GUGCUa-----GUGGC- -5'
17217 5' -54.3 NC_004333.2 + 37574 0.69 0.566046
Target:  5'- cGuuGGUCuACCAGccgUCACGGuugauguucgaaucgUCGCCGg -3'
miRNA:   3'- -CggCCAGcUGGUCa--AGUGCU---------------AGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 28976 0.69 0.561713
Target:  5'- -gCGG-CGAUCAGUUgCGCGGcCGCCGg -3'
miRNA:   3'- cgGCCaGCUGGUCAA-GUGCUaGUGGC- -5'
17217 5' -54.3 NC_004333.2 + 20462 0.69 0.560631
Target:  5'- cGCCGGUCGugacgcaGCCGGUUaGCG-UC-CCGg -3'
miRNA:   3'- -CGGCCAGC-------UGGUCAAgUGCuAGuGGC- -5'
17217 5' -54.3 NC_004333.2 + 47508 0.7 0.55092
Target:  5'- gGCCGGcgCGACCAGUaCAuUGAaugcacUCGCCa -3'
miRNA:   3'- -CGGCCa-GCUGGUCAaGU-GCU------AGUGGc -5'
17217 5' -54.3 NC_004333.2 + 5391 0.7 0.529536
Target:  5'- aGCCGGcgUUGACCuGUUCGCGuucuUCuGCCa -3'
miRNA:   3'- -CGGCC--AGCUGGuCAAGUGCu---AG-UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.