miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17218 3' -53 NC_004333.2 + 39264 0.69 0.605776
Target:  5'- cGCGgGCCGUgCU--GCCG-GUGCAGCGc -3'
miRNA:   3'- -CGCaCGGCA-GAuaUGGCaCGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 19630 0.67 0.760694
Target:  5'- uUGUGCCG-CgccgACCGUGCGacCGGCGc -3'
miRNA:   3'- cGCACGGCaGaua-UGGCACGC--GUUGU- -5'
17218 3' -53 NC_004333.2 + 38553 0.77 0.238882
Target:  5'- uGCGUGCCGUCccAUugCGgcaGCGCAAUc -3'
miRNA:   3'- -CGCACGGCAGa-UAugGCa--CGCGUUGu -5'
17218 3' -53 NC_004333.2 + 44748 0.71 0.528105
Target:  5'- cUGUGCCGcuucgacgUCUGUGCCGaUGcCGCGAUg -3'
miRNA:   3'- cGCACGGC--------AGAUAUGGC-AC-GCGUUGu -5'
17218 3' -53 NC_004333.2 + 11982 0.66 0.791501
Target:  5'- cGCGcGCCG-CUgcgcAUGCCGgGCcGCGACGa -3'
miRNA:   3'- -CGCaCGGCaGA----UAUGGCaCG-CGUUGU- -5'
17218 3' -53 NC_004333.2 + 18558 0.66 0.787477
Target:  5'- gGCGUGCCGgcaacggCggguacgccuccgGUGCCGgguUGCGCGAa- -3'
miRNA:   3'- -CGCACGGCa------Ga------------UAUGGC---ACGCGUUgu -5'
17218 3' -53 NC_004333.2 + 2996 0.67 0.758592
Target:  5'- aGCG-GCaCGUUgacggucacgACCGcUGCGCAGCAc -3'
miRNA:   3'- -CGCaCG-GCAGaua-------UGGC-ACGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 2366 0.67 0.739443
Target:  5'- gGCGUGCCGgccacgGUACaCGacuUGCGaCGGCAa -3'
miRNA:   3'- -CGCACGGCaga---UAUG-GC---ACGC-GUUGU- -5'
17218 3' -53 NC_004333.2 + 10268 0.67 0.728641
Target:  5'- aCG-GCCG-C-AUGCgCGUGCGCGACu -3'
miRNA:   3'- cGCaCGGCaGaUAUG-GCACGCGUUGu -5'
17218 3' -53 NC_004333.2 + 22032 0.67 0.728641
Target:  5'- uGCGgGCCGUUUGUcguuUC-UGCGCAACGu -3'
miRNA:   3'- -CGCaCGGCAGAUAu---GGcACGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 46901 0.68 0.705642
Target:  5'- uUGUGCCGUUcgAUGCCGagcacguucguguUGCGCAc-- -3'
miRNA:   3'- cGCACGGCAGa-UAUGGC-------------ACGCGUugu -5'
17218 3' -53 NC_004333.2 + 36959 0.68 0.695677
Target:  5'- cGCGUGCCGUCcaguaaaGCCaauugGCGCAGu- -3'
miRNA:   3'- -CGCACGGCAGaua----UGGca---CGCGUUgu -5'
17218 3' -53 NC_004333.2 + 39565 0.68 0.66213
Target:  5'- gGCGUGUCGUCcGUuacGCCGcGCGCuucCAu -3'
miRNA:   3'- -CGCACGGCAGaUA---UGGCaCGCGuu-GU- -5'
17218 3' -53 NC_004333.2 + 18304 0.69 0.654253
Target:  5'- aGCGUGCCGUCggcgucguagauuuCCG-GCGCGuauuGCGa -3'
miRNA:   3'- -CGCACGGCAGauau----------GGCaCGCGU----UGU- -5'
17218 3' -53 NC_004333.2 + 9696 0.69 0.6396
Target:  5'- gGCGcGCCGcCggcaGCCgGUGCGCAACc -3'
miRNA:   3'- -CGCaCGGCaGaua-UGG-CACGCGUUGu -5'
17218 3' -53 NC_004333.2 + 10896 0.69 0.605776
Target:  5'- uGCG-GCCG-CUcca-CGUGCGCAACGc -3'
miRNA:   3'- -CGCaCGGCaGAuaugGCACGCGUUGU- -5'
17218 3' -53 NC_004333.2 + 28549 0.7 0.594535
Target:  5'- cGCGUGCCGcguugcgaCUGUGgCGcGCGUAACu -3'
miRNA:   3'- -CGCACGGCa-------GAUAUgGCaCGCGUUGu -5'
17218 3' -53 NC_004333.2 + 29979 0.7 0.572164
Target:  5'- aGCG-GCCGaggAUGCCGcGCGCGGCc -3'
miRNA:   3'- -CGCaCGGCagaUAUGGCaCGCGUUGu -5'
17218 3' -53 NC_004333.2 + 41894 0.7 0.561051
Target:  5'- cGCGgccgggcGCCGUC-GUGCCGUcGgGCAGCu -3'
miRNA:   3'- -CGCa------CGGCAGaUAUGGCA-CgCGUUGu -5'
17218 3' -53 NC_004333.2 + 5556 0.71 0.528105
Target:  5'- uGCGauucagGUCGUCUAcGCCGaagcgaaguggcUGCGCAACGa -3'
miRNA:   3'- -CGCa-----CGGCAGAUaUGGC------------ACGCGUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.