Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17218 | 3' | -53 | NC_004333.2 | + | 46800 | 1.11 | 0.001093 |
Target: 5'- aGCGUGCCGUCUAUACCGUGCGCAACAc -3' miRNA: 3'- -CGCACGGCAGAUAUGGCACGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 8961 | 0.81 | 0.137413 |
Target: 5'- cGCGUGCgCGggCUGgaucguggGCCGUGCGCGGCGg -3' miRNA: 3'- -CGCACG-GCa-GAUa-------UGGCACGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 38553 | 0.77 | 0.238882 |
Target: 5'- uGCGUGCCGUCccAUugCGgcaGCGCAAUc -3' miRNA: 3'- -CGCACGGCAGa-UAugGCa--CGCGUUGu -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 27400 | 0.76 | 0.251912 |
Target: 5'- cCGUGCCGUCauguuUGCCGUaacccuGCGCGGCGa -3' miRNA: 3'- cGCACGGCAGau---AUGGCA------CGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 18821 | 0.72 | 0.44836 |
Target: 5'- cGCGUGCUG-CUaucgaagcccgcgcgGcaguacgcaguUGCCGUGCGCAACGc -3' miRNA: 3'- -CGCACGGCaGA---------------U-----------AUGGCACGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 18180 | 0.71 | 0.485365 |
Target: 5'- gGCGUGCCGggugAUGCgcucguCGUGCGCGcgGCAu -3' miRNA: 3'- -CGCACGGCaga-UAUG------GCACGCGU--UGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 32333 | 0.71 | 0.506543 |
Target: 5'- cGCGUGCacggcugccggGUCgcugcccgAUAgCGUGCGCAGCAc -3' miRNA: 3'- -CGCACGg----------CAGa-------UAUgGCACGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 44748 | 0.71 | 0.528105 |
Target: 5'- cUGUGCCGcuucgacgUCUGUGCCGaUGcCGCGAUg -3' miRNA: 3'- cGCACGGC--------AGAUAUGGC-AC-GCGUUGu -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 5556 | 0.71 | 0.528105 |
Target: 5'- uGCGauucagGUCGUCUAcGCCGaagcgaaguggcUGCGCAACGa -3' miRNA: 3'- -CGCa-----CGGCAGAUaUGGC------------ACGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 10001 | 0.71 | 0.528105 |
Target: 5'- cGCGgGuuGUCg--GCCGUcuGCGCGACGu -3' miRNA: 3'- -CGCaCggCAGauaUGGCA--CGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 799 | 0.7 | 0.539014 |
Target: 5'- aGCGUGCCgGUC---GCCG-GCGCAGg- -3' miRNA: 3'- -CGCACGG-CAGauaUGGCaCGCGUUgu -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 41894 | 0.7 | 0.561051 |
Target: 5'- cGCGgccgggcGCCGUC-GUGCCGUcGgGCAGCu -3' miRNA: 3'- -CGCa------CGGCAGaUAUGGCA-CgCGUUGu -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 29979 | 0.7 | 0.572164 |
Target: 5'- aGCG-GCCGaggAUGCCGcGCGCGGCc -3' miRNA: 3'- -CGCaCGGCagaUAUGGCaCGCGUUGu -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 28549 | 0.7 | 0.594535 |
Target: 5'- cGCGUGCCGcguugcgaCUGUGgCGcGCGUAACu -3' miRNA: 3'- -CGCACGGCa-------GAUAUgGCaCGCGUUGu -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 35417 | 0.7 | 0.594535 |
Target: 5'- uUGUGCCGcCUGUGauguuggCGUGCGCAGu- -3' miRNA: 3'- cGCACGGCaGAUAUg------GCACGCGUUgu -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 10896 | 0.69 | 0.605776 |
Target: 5'- uGCG-GCCG-CUcca-CGUGCGCAACGc -3' miRNA: 3'- -CGCaCGGCaGAuaugGCACGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 39264 | 0.69 | 0.605776 |
Target: 5'- cGCGgGCCGUgCU--GCCG-GUGCAGCGc -3' miRNA: 3'- -CGCaCGGCA-GAuaUGGCaCGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 5045 | 0.69 | 0.628318 |
Target: 5'- gGCG-GCCGgCUGUugGCCGacgucgGCGCGGCGc -3' miRNA: 3'- -CGCaCGGCaGAUA--UGGCa-----CGCGUUGU- -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 9696 | 0.69 | 0.6396 |
Target: 5'- gGCGcGCCGcCggcaGCCgGUGCGCAACc -3' miRNA: 3'- -CGCaCGGCaGaua-UGG-CACGCGUUGu -5' |
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17218 | 3' | -53 | NC_004333.2 | + | 11076 | 0.69 | 0.650874 |
Target: 5'- gGCGUGCgGcCcAUuccgggaaugAUCGUGCGCGACGa -3' miRNA: 3'- -CGCACGgCaGaUA----------UGGCACGCGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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