miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17218 5' -54.8 NC_004333.2 + 46743 0.67 0.636145
Target:  5'- uUCGGUAUUGGuCGGUugGGGCaUGUc -3'
miRNA:   3'- gAGCCGUAGCUuGCCGugUUCG-ACGa -5'
17218 5' -54.8 NC_004333.2 + 23102 0.67 0.63502
Target:  5'- aUCGGUugcGUCGGcugaacgGCGGCACugauGUUGCg -3'
miRNA:   3'- gAGCCG---UAGCU-------UGCCGUGuu--CGACGa -5'
17218 5' -54.8 NC_004333.2 + 18296 0.67 0.624896
Target:  5'- gUCGGCGUCGuagauuucCGGCGCGuaUUGCg -3'
miRNA:   3'- gAGCCGUAGCuu------GCCGUGUucGACGa -5'
17218 5' -54.8 NC_004333.2 + 38760 0.67 0.624896
Target:  5'- -gCGGCcaCGAGCGGCAucgcCGAGCUuGCc -3'
miRNA:   3'- gaGCCGuaGCUUGCCGU----GUUCGA-CGa -5'
17218 5' -54.8 NC_004333.2 + 9121 0.67 0.613653
Target:  5'- aUCGGCGUCG-ACGuGuCGCAGGUcGCc -3'
miRNA:   3'- gAGCCGUAGCuUGC-C-GUGUUCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 23774 0.67 0.613653
Target:  5'- uUCuGCG-CGAACGGCACGAGgaauuUUGCg -3'
miRNA:   3'- gAGcCGUaGCUUGCCGUGUUC-----GACGa -5'
17218 5' -54.8 NC_004333.2 + 32321 0.67 0.602427
Target:  5'- gUCGGUcaCGAGCGcGUGCAcGGCUGCc -3'
miRNA:   3'- gAGCCGuaGCUUGC-CGUGU-UCGACGa -5'
17218 5' -54.8 NC_004333.2 + 29402 0.67 0.591228
Target:  5'- -aCGGCGUaacgccguucgcCGucGCGGCGCuGGCUGCc -3'
miRNA:   3'- gaGCCGUA------------GCu-UGCCGUGuUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 31372 0.67 0.59011
Target:  5'- gCUCGGCGUCGGcgcagguGCGGCcggucucgccgGCAuGgUGCUu -3'
miRNA:   3'- -GAGCCGUAGCU-------UGCCG-----------UGUuCgACGA- -5'
17218 5' -54.8 NC_004333.2 + 20885 0.68 0.568947
Target:  5'- -gCGGCGaCGAGCccGGCGCAGcGCgUGCUa -3'
miRNA:   3'- gaGCCGUaGCUUG--CCGUGUU-CG-ACGA- -5'
17218 5' -54.8 NC_004333.2 + 20476 0.68 0.568947
Target:  5'- -gCGGUGaCGAGCGGCGCGGccaCUGCg -3'
miRNA:   3'- gaGCCGUaGCUUGCCGUGUUc--GACGa -5'
17218 5' -54.8 NC_004333.2 + 30800 0.68 0.568947
Target:  5'- cCUCGGCGaCGccACGGC-CGAGCUuGCc -3'
miRNA:   3'- -GAGCCGUaGCu-UGCCGuGUUCGA-CGa -5'
17218 5' -54.8 NC_004333.2 + 3284 0.68 0.557883
Target:  5'- aUCGGgG-CGGGCGGCGCGccgGGCcgGCUc -3'
miRNA:   3'- gAGCCgUaGCUUGCCGUGU---UCGa-CGA- -5'
17218 5' -54.8 NC_004333.2 + 25305 0.68 0.556779
Target:  5'- gCUCGGCAUuucaaccCGAACGGCAgCGucGCggGCg -3'
miRNA:   3'- -GAGCCGUA-------GCUUGCCGU-GUu-CGa-CGa -5'
17218 5' -54.8 NC_004333.2 + 46759 0.68 0.551274
Target:  5'- aCUCGGCGUCGAaguguccgccgcgcuGCucGGCACGuccaAGCgUGCc -3'
miRNA:   3'- -GAGCCGUAGCU---------------UG--CCGUGU----UCG-ACGa -5'
17218 5' -54.8 NC_004333.2 + 27298 0.68 0.54688
Target:  5'- -cCGGCGaaacCGAugauGCGGC-CAGGCUGCc -3'
miRNA:   3'- gaGCCGUa---GCU----UGCCGuGUUCGACGa -5'
17218 5' -54.8 NC_004333.2 + 43313 0.68 0.54688
Target:  5'- -cUGGCAgau-GCGGCGCGGGCaUGCg -3'
miRNA:   3'- gaGCCGUagcuUGCCGUGUUCG-ACGa -5'
17218 5' -54.8 NC_004333.2 + 15545 0.68 0.545784
Target:  5'- --gGGCAUCGAGCagccccaucguGGCGagcuccuUAAGCUGCUc -3'
miRNA:   3'- gagCCGUAGCUUG-----------CCGU-------GUUCGACGA- -5'
17218 5' -54.8 NC_004333.2 + 6670 0.68 0.535948
Target:  5'- -gCGGCGcUGGGCGGCGCGccguGGCgGCg -3'
miRNA:   3'- gaGCCGUaGCUUGCCGUGU----UCGaCGa -5'
17218 5' -54.8 NC_004333.2 + 38247 0.68 0.535948
Target:  5'- uCUCGGCGgccauugCGAGCGGCGugcCAAGaucgGCg -3'
miRNA:   3'- -GAGCCGUa------GCUUGCCGU---GUUCga--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.