miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17230 5' -46.2 NC_004348.1 + 19458 0.66 0.98615
Target:  5'- ----cUUUGCgUAGAUUAGCcauuuGCCAGCUc -3'
miRNA:   3'- ccuauAAACG-GUCUAAUUG-----CGGUCGG- -5'
17230 5' -46.2 NC_004348.1 + 2041 0.67 0.975445
Target:  5'- -------aGCCAGcaccauauccGCGCCAGCCu -3'
miRNA:   3'- ccuauaaaCGGUCuaau------UGCGGUCGG- -5'
17230 5' -46.2 NC_004348.1 + 26609 0.67 0.970346
Target:  5'- -------cGCCAGAUUAAgCGUC-GCCg -3'
miRNA:   3'- ccuauaaaCGGUCUAAUU-GCGGuCGG- -5'
17230 5' -46.2 NC_004348.1 + 37008 0.67 0.966798
Target:  5'- aGGAUGgaUGUCAGAggagaaagGAcacaaaugccacCGCCAGCUg -3'
miRNA:   3'- -CCUAUaaACGGUCUaa------UU------------GCGGUCGG- -5'
17230 5' -46.2 NC_004348.1 + 8969 0.68 0.96296
Target:  5'- cGGAa--UUGCCGGAaagcGGCGCgGGUCa -3'
miRNA:   3'- -CCUauaAACGGUCUaa--UUGCGgUCGG- -5'
17230 5' -46.2 NC_004348.1 + 2097 0.68 0.96296
Target:  5'- cGGAUAUggUGCUGGcuaAGCGCuCAGaCCg -3'
miRNA:   3'- -CCUAUAa-ACGGUCuaaUUGCG-GUC-GG- -5'
17230 5' -46.2 NC_004348.1 + 33593 0.7 0.914276
Target:  5'- -------cGCCAGA---ACGUCAGCCc -3'
miRNA:   3'- ccuauaaaCGGUCUaauUGCGGUCGG- -5'
17230 5' -46.2 NC_004348.1 + 22178 0.72 0.830062
Target:  5'- uGAUAUUUGCCgugauAGAUguAUGCCGuuGCCg -3'
miRNA:   3'- cCUAUAAACGG-----UCUAauUGCGGU--CGG- -5'
17230 5' -46.2 NC_004348.1 + 28298 0.72 0.830062
Target:  5'- cGGAUAUUaaugccuaucUGUCAGAagAAgGCCuGGCCa -3'
miRNA:   3'- -CCUAUAA----------ACGGUCUaaUUgCGG-UCGG- -5'
17230 5' -46.2 NC_004348.1 + 36132 1.16 0.002124
Target:  5'- gGGAUAUUUGCCAGAUUAACGCCAGCCu -3'
miRNA:   3'- -CCUAUAAACGGUCUAAUUGCGGUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.