miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1725 3' -59.5 NC_001347.2 + 142908 0.66 0.88775
Target:  5'- aUUCGCGUCG---GCGCCcggGCCGCCu -3'
miRNA:   3'- -AGGCGCAGCgggUGCGGugaUGGUGG- -5'
1725 3' -59.5 NC_001347.2 + 228218 0.66 0.88775
Target:  5'- aCCGCGUugUGCCCAgCGCCAUgUGCgGg- -3'
miRNA:   3'- aGGCGCA--GCGGGU-GCGGUG-AUGgUgg -5'
1725 3' -59.5 NC_001347.2 + 40455 0.66 0.88775
Target:  5'- gUCCGaCGcUGCCUGCGC-ACUGCCGgUg -3'
miRNA:   3'- -AGGC-GCaGCGGGUGCGgUGAUGGUgG- -5'
1725 3' -59.5 NC_001347.2 + 101174 0.66 0.88775
Target:  5'- gCCGCGgcgGCgCACGCCAUcaaguuCCACg -3'
miRNA:   3'- aGGCGCag-CGgGUGCGGUGau----GGUGg -5'
1725 3' -59.5 NC_001347.2 + 97982 0.66 0.887106
Target:  5'- aCCGUaccGUCGUCCauuaacaACGCCGCgucgUGCCaACCc -3'
miRNA:   3'- aGGCG---CAGCGGG-------UGCGGUG----AUGG-UGG- -5'
1725 3' -59.5 NC_001347.2 + 102959 0.66 0.88122
Target:  5'- aCCGCaGUUGCUCuu-UCACUACCGCa -3'
miRNA:   3'- aGGCG-CAGCGGGugcGGUGAUGGUGg -5'
1725 3' -59.5 NC_001347.2 + 157757 0.66 0.88122
Target:  5'- gCUuCGaCGCCCGCGCUGauuuggccguaUACCACCg -3'
miRNA:   3'- aGGcGCaGCGGGUGCGGUg----------AUGGUGG- -5'
1725 3' -59.5 NC_001347.2 + 178819 0.66 0.88122
Target:  5'- nCC-CuUCGUCCucCGCCGCcACCACCc -3'
miRNA:   3'- aGGcGcAGCGGGu-GCGGUGaUGGUGG- -5'
1725 3' -59.5 NC_001347.2 + 136599 0.66 0.88122
Target:  5'- aUCCGCGUgGCa-ACGCC-CUGacaACCa -3'
miRNA:   3'- -AGGCGCAgCGggUGCGGuGAUgg-UGG- -5'
1725 3' -59.5 NC_001347.2 + 207373 0.66 0.88122
Target:  5'- aCCGUGUCGUUCugG-UACaACCACa -3'
miRNA:   3'- aGGCGCAGCGGGugCgGUGaUGGUGg -5'
1725 3' -59.5 NC_001347.2 + 208697 0.66 0.88122
Target:  5'- -gCGCagGUCGUgCACGUCG--GCCACCa -3'
miRNA:   3'- agGCG--CAGCGgGUGCGGUgaUGGUGG- -5'
1725 3' -59.5 NC_001347.2 + 135603 0.66 0.874493
Target:  5'- aCCGuCGUCGUcggCCGacCGCCGCgACCcCCa -3'
miRNA:   3'- aGGC-GCAGCG---GGU--GCGGUGaUGGuGG- -5'
1725 3' -59.5 NC_001347.2 + 130906 0.66 0.874493
Target:  5'- --aGCaGcCGCCgC-CGCCACcACCACCa -3'
miRNA:   3'- aggCG-CaGCGG-GuGCGGUGaUGGUGG- -5'
1725 3' -59.5 NC_001347.2 + 164686 0.66 0.874493
Target:  5'- gCCGUggccGUUGCCgcguuaGCGCCGCUuucgguacCCGCCg -3'
miRNA:   3'- aGGCG----CAGCGGg-----UGCGGUGAu-------GGUGG- -5'
1725 3' -59.5 NC_001347.2 + 194893 0.66 0.87381
Target:  5'- -gCGCGUaugucaGCuCCACGCCGgUAgcaagauCCGCCu -3'
miRNA:   3'- agGCGCAg-----CG-GGUGCGGUgAU-------GGUGG- -5'
1725 3' -59.5 NC_001347.2 + 210040 0.66 0.873124
Target:  5'- cCCGCGggaugucucagaCGCCCGCGuCCGaaa-CACCg -3'
miRNA:   3'- aGGCGCa-----------GCGGGUGC-GGUgaugGUGG- -5'
1725 3' -59.5 NC_001347.2 + 59812 0.66 0.872437
Target:  5'- gCCGCGaagGCCUACGCCguggggcaguuugaGCagcCCACCg -3'
miRNA:   3'- aGGCGCag-CGGGUGCGG--------------UGau-GGUGG- -5'
1725 3' -59.5 NC_001347.2 + 85972 0.66 0.867574
Target:  5'- cCCGUGUaGUgCGaGCCGCcGCCACCc -3'
miRNA:   3'- aGGCGCAgCGgGUgCGGUGaUGGUGG- -5'
1725 3' -59.5 NC_001347.2 + 142273 0.66 0.867574
Target:  5'- gCCGCGUCGCUgAUGgaCAaguUUGCCGCg -3'
miRNA:   3'- aGGCGCAGCGGgUGCg-GU---GAUGGUGg -5'
1725 3' -59.5 NC_001347.2 + 39213 0.66 0.867574
Target:  5'- gCCGCG-CGCCaCACGgCGCccAUgGCCu -3'
miRNA:   3'- aGGCGCaGCGG-GUGCgGUGa-UGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.