miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1725 5' -54 NC_001347.2 + 39940 0.66 0.986877
Target:  5'- cGuGUGGUGcG-GAG-GACGGCGaCGGCg -3'
miRNA:   3'- uCuUACCGC-CaCUCaCUGCUGC-GUCG- -5'
1725 5' -54 NC_001347.2 + 140543 0.66 0.986877
Target:  5'- gGGuuUGGaCGGcaaaGGUGACGACGgGGUu -3'
miRNA:   3'- -UCuuACC-GCCac--UCACUGCUGCgUCG- -5'
1725 5' -54 NC_001347.2 + 154285 0.66 0.986877
Target:  5'- uGAGUGGCguGGUGcucaUGACGcCGguGCc -3'
miRNA:   3'- uCUUACCG--CCACuc--ACUGCuGCguCG- -5'
1725 5' -54 NC_001347.2 + 155598 0.66 0.983465
Target:  5'- gAGGggGGaGGUG-GUGACGACGaggaCGGUg -3'
miRNA:   3'- -UCUuaCCgCCACuCACUGCUGC----GUCG- -5'
1725 5' -54 NC_001347.2 + 159267 0.66 0.983279
Target:  5'- ----aGGCGGcGAGgcgaaacuggugcUGGCGGCGCcgGGCg -3'
miRNA:   3'- ucuuaCCGCCaCUC-------------ACUGCUGCG--UCG- -5'
1725 5' -54 NC_001347.2 + 31 0.66 0.981527
Target:  5'- ----cGGCGGUGuuuugGGUGugucGgGGCGCGGCc -3'
miRNA:   3'- ucuuaCCGCCAC-----UCAC----UgCUGCGUCG- -5'
1725 5' -54 NC_001347.2 + 152354 0.66 0.979423
Target:  5'- gAGAcUGGUGGUGAGaguaGugGugG-GGCu -3'
miRNA:   3'- -UCUuACCGCCACUCa---CugCugCgUCG- -5'
1725 5' -54 NC_001347.2 + 156781 0.66 0.979423
Target:  5'- ---cUGGCGG-GAGaagggaaGGCGGCaGCGGCa -3'
miRNA:   3'- ucuuACCGCCaCUCa------CUGCUG-CGUCG- -5'
1725 5' -54 NC_001347.2 + 2151 0.67 0.977145
Target:  5'- ----cGGUGGUcGG-GGCgGACGCGGCa -3'
miRNA:   3'- ucuuaCCGCCAcUCaCUG-CUGCGUCG- -5'
1725 5' -54 NC_001347.2 + 150594 0.67 0.977145
Target:  5'- ----cGGCaGU-AGUGGCGGCGuCGGCg -3'
miRNA:   3'- ucuuaCCGcCAcUCACUGCUGC-GUCG- -5'
1725 5' -54 NC_001347.2 + 17221 0.67 0.976427
Target:  5'- ---uUGGCGGacgaUGAGgagcagggagaggaUGAUGACGaCAGCg -3'
miRNA:   3'- ucuuACCGCC----ACUC--------------ACUGCUGC-GUCG- -5'
1725 5' -54 NC_001347.2 + 7951 0.67 0.974688
Target:  5'- ----aGGUGGUGcgacugacGGUGGCGGCgGCAGa -3'
miRNA:   3'- ucuuaCCGCCAC--------UCACUGCUG-CGUCg -5'
1725 5' -54 NC_001347.2 + 173660 0.67 0.974688
Target:  5'- aGGAgGUGGCGGcG-GUGGCGGCaagaAGCa -3'
miRNA:   3'- -UCU-UACCGCCaCuCACUGCUGcg--UCG- -5'
1725 5' -54 NC_001347.2 + 191653 0.67 0.969206
Target:  5'- ----aGGCcgaacGGUGAaucuuggcGUGGCGcACGCAGCg -3'
miRNA:   3'- ucuuaCCG-----CCACU--------CACUGC-UGCGUCG- -5'
1725 5' -54 NC_001347.2 + 66788 0.67 0.969206
Target:  5'- ----cGaCGGUG-GUGGCGGCgGCGGCa -3'
miRNA:   3'- ucuuaCcGCCACuCACUGCUG-CGUCG- -5'
1725 5' -54 NC_001347.2 + 59034 0.67 0.968316
Target:  5'- cAGcAGUGGCGGagGAgcauccGUGACcucgagccaccaugGGCGCGGCg -3'
miRNA:   3'- -UC-UUACCGCCa-CU------CACUG--------------CUGCGUCG- -5'
1725 5' -54 NC_001347.2 + 44048 0.67 0.962927
Target:  5'- -cGGUGGUGGcgcuggGGGUGGCGGCaGUGGUa -3'
miRNA:   3'- ucUUACCGCCa-----CUCACUGCUG-CGUCG- -5'
1725 5' -54 NC_001347.2 + 229511 0.68 0.955806
Target:  5'- ----cGGCGGUGuuuugGGUGugucGgGGCGCGGCg -3'
miRNA:   3'- ucuuaCCGCCAC-----UCAC----UgCUGCGUCG- -5'
1725 5' -54 NC_001347.2 + 1734 0.68 0.955806
Target:  5'- ----cGGCGGUGGGccgGcACGACGguGg -3'
miRNA:   3'- ucuuaCCGCCACUCa--C-UGCUGCguCg -5'
1725 5' -54 NC_001347.2 + 228073 0.68 0.955427
Target:  5'- gGGGAUGGguuuauuggauauCGGUGAagcaGCGugGCGGCg -3'
miRNA:   3'- -UCUUACC-------------GCCACUcac-UGCugCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.