miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1725 5' -54 NC_001347.2 + 80882 1.11 0.005399
Target:  5'- uAGAAUGGCGGUGAGUGACGACGCAGCc -3'
miRNA:   3'- -UCUUACCGCCACUCACUGCUGCGUCG- -5'
1725 5' -54 NC_001347.2 + 172116 0.75 0.637356
Target:  5'- ---cUGGCGGUGGGUcccGACGACGagguGGCg -3'
miRNA:   3'- ucuuACCGCCACUCA---CUGCUGCg---UCG- -5'
1725 5' -54 NC_001347.2 + 75407 0.75 0.667538
Target:  5'- gGGAGcGGCGGcc-GUGGCGGCgGCAGCg -3'
miRNA:   3'- -UCUUaCCGCCacuCACUGCUG-CGUCG- -5'
1725 5' -54 NC_001347.2 + 29737 0.72 0.792454
Target:  5'- --uGUGGUGGcUGGGaGugGugGCGGCa -3'
miRNA:   3'- ucuUACCGCC-ACUCaCugCugCGUCG- -5'
1725 5' -54 NC_001347.2 + 148609 0.72 0.801324
Target:  5'- uGAccGGCGGUGcggucgcgGGUGGcCGGCGuCAGCg -3'
miRNA:   3'- uCUuaCCGCCAC--------UCACU-GCUGC-GUCG- -5'
1725 5' -54 NC_001347.2 + 65727 0.72 0.801324
Target:  5'- ----cGGCGGUgGAG-GGCG-CGCGGCa -3'
miRNA:   3'- ucuuaCCGCCA-CUCaCUGCuGCGUCG- -5'
1725 5' -54 NC_001347.2 + 180 0.72 0.810045
Target:  5'- cGGGcguGUGGCGGgugugccggcgGGGUGugGugGCGGg -3'
miRNA:   3'- -UCU---UACCGCCa----------CUCACugCugCGUCg -5'
1725 5' -54 NC_001347.2 + 229659 0.72 0.810045
Target:  5'- cGGGcguGUGGCGGgugugccggcgGGGUGugGugGCGGg -3'
miRNA:   3'- -UCU---UACCGCCa----------CUCACugCugCGUCg -5'
1725 5' -54 NC_001347.2 + 152313 0.71 0.851152
Target:  5'- ----cGGCGGUGgugacuggggacGGUGAUGAUGCuGCu -3'
miRNA:   3'- ucuuaCCGCCAC------------UCACUGCUGCGuCG- -5'
1725 5' -54 NC_001347.2 + 1973 0.71 0.858824
Target:  5'- gGGGAcGGCGGcGGG-GACGACGUcccgccAGCg -3'
miRNA:   3'- -UCUUaCCGCCaCUCaCUGCUGCG------UCG- -5'
1725 5' -54 NC_001347.2 + 198373 0.71 0.858824
Target:  5'- ---cUGGCgcaGGUGGGUGGCG-CGCGGg -3'
miRNA:   3'- ucuuACCG---CCACUCACUGCuGCGUCg -5'
1725 5' -54 NC_001347.2 + 185279 0.71 0.866296
Target:  5'- gAGAAgucucgGGUGGUGAuGaugaaguucaUGACGACGaCGGCg -3'
miRNA:   3'- -UCUUa-----CCGCCACU-C----------ACUGCUGC-GUCG- -5'
1725 5' -54 NC_001347.2 + 63063 0.71 0.872127
Target:  5'- uGggUGGCGGaggacugccggcGGGUGugGGCuCGGCa -3'
miRNA:   3'- uCuuACCGCCa-----------CUCACugCUGcGUCG- -5'
1725 5' -54 NC_001347.2 + 140655 0.7 0.887466
Target:  5'- gGGggUGGUGGggauuccgGGGgaaUGAUggGGCGCGGCg -3'
miRNA:   3'- -UCuuACCGCCa-------CUC---ACUG--CUGCGUCG- -5'
1725 5' -54 NC_001347.2 + 183422 0.7 0.900495
Target:  5'- uGAagGGCGGUGGGUGGaacaGCAGg -3'
miRNA:   3'- uCUuaCCGCCACUCACUgcugCGUCg -5'
1725 5' -54 NC_001347.2 + 77095 0.7 0.900495
Target:  5'- gAGGA-GGCGGagGAGUGAaCGGucgucguugcCGCGGCg -3'
miRNA:   3'- -UCUUaCCGCCa-CUCACU-GCU----------GCGUCG- -5'
1725 5' -54 NC_001347.2 + 136130 0.7 0.906065
Target:  5'- gGGGGguagGGCGG-GAGgcaGGCGggagcggGCGCAGCg -3'
miRNA:   3'- -UCUUa---CCGCCaCUCa--CUGC-------UGCGUCG- -5'
1725 5' -54 NC_001347.2 + 66978 0.7 0.906672
Target:  5'- ----cGGUGGUgacGAGUGGCGGacaUGCGGCu -3'
miRNA:   3'- ucuuaCCGCCA---CUCACUGCU---GCGUCG- -5'
1725 5' -54 NC_001347.2 + 7876 0.7 0.906672
Target:  5'- cGGAAacGGCGGU-AGUGACcagguggucaGugGCGGCg -3'
miRNA:   3'- -UCUUa-CCGCCAcUCACUG----------CugCGUCG- -5'
1725 5' -54 NC_001347.2 + 173547 0.7 0.906672
Target:  5'- ----cGGCGGUG-GUGGCG--GCAGCc -3'
miRNA:   3'- ucuuaCCGCCACuCACUGCugCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.