Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1725 | 5' | -54 | NC_001347.2 | + | 108011 | 0.68 | 0.951919 |
Target: 5'- -cGGUGGUGGUGuGUGAUGGggUGUGGUg -3' miRNA: 3'- ucUUACCGCCACuCACUGCU--GCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 228353 | 0.68 | 0.947386 |
Target: 5'- uGggUGGUgcgaugcGGUGGauGUGGCGGggUGCGGCg -3' miRNA: 3'- uCuuACCG-------CCACU--CACUGCU--GCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 159567 | 0.68 | 0.943473 |
Target: 5'- ----cGGCGGUguugGAGcGGCGccagACGCAGCg -3' miRNA: 3'- ucuuaCCGCCA----CUCaCUGC----UGCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 156676 | 0.69 | 0.934115 |
Target: 5'- --cAUGGCGGcGGGU--CGugGCGGCu -3' miRNA: 3'- ucuUACCGCCaCUCAcuGCugCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 173830 | 0.69 | 0.934115 |
Target: 5'- cGGGcGGCGGcgGAGgagGAgGAgGCGGCg -3' miRNA: 3'- uCUUaCCGCCa-CUCa--CUgCUgCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 126670 | 0.69 | 0.929089 |
Target: 5'- cGAGUaccGGCGcGUG-GUGGCuuacgacgcuGACGCGGCg -3' miRNA: 3'- uCUUA---CCGC-CACuCACUG----------CUGCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 13932 | 0.69 | 0.929089 |
Target: 5'- gAGAGUauaaacuggGGCGGgcgcgGGGUGGCGAaGCGGg -3' miRNA: 3'- -UCUUA---------CCGCCa----CUCACUGCUgCGUCg -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 82715 | 0.69 | 0.923832 |
Target: 5'- cGGGugGUGGCGGUG-GUGcaGCGGCgGCugAGCg -3' miRNA: 3'- -UCU--UACCGCCACuCAC--UGCUG-CG--UCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 7876 | 0.7 | 0.906672 |
Target: 5'- cGGAAacGGCGGU-AGUGACcagguggucaGugGCGGCg -3' miRNA: 3'- -UCUUa-CCGCCAcUCACUG----------CugCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 173547 | 0.7 | 0.906672 |
Target: 5'- ----cGGCGGUG-GUGGCG--GCAGCc -3' miRNA: 3'- ucuuaCCGCCACuCACUGCugCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 66978 | 0.7 | 0.906672 |
Target: 5'- ----cGGUGGUgacGAGUGGCGGacaUGCGGCu -3' miRNA: 3'- ucuuaCCGCCA---CUCACUGCU---GCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 136130 | 0.7 | 0.906065 |
Target: 5'- gGGGGguagGGCGG-GAGgcaGGCGggagcggGCGCAGCg -3' miRNA: 3'- -UCUUa---CCGCCaCUCa--CUGC-------UGCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 183422 | 0.7 | 0.900495 |
Target: 5'- uGAagGGCGGUGGGUGGaacaGCAGg -3' miRNA: 3'- uCUuaCCGCCACUCACUgcugCGUCg -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 77095 | 0.7 | 0.900495 |
Target: 5'- gAGGA-GGCGGagGAGUGAaCGGucgucguugcCGCGGCg -3' miRNA: 3'- -UCUUaCCGCCa-CUCACU-GCU----------GCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 140655 | 0.7 | 0.887466 |
Target: 5'- gGGggUGGUGGggauuccgGGGgaaUGAUggGGCGCGGCg -3' miRNA: 3'- -UCuuACCGCCa-------CUC---ACUG--CUGCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 63063 | 0.71 | 0.872127 |
Target: 5'- uGggUGGCGGaggacugccggcGGGUGugGGCuCGGCa -3' miRNA: 3'- uCuuACCGCCa-----------CUCACugCUGcGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 185279 | 0.71 | 0.866296 |
Target: 5'- gAGAAgucucgGGUGGUGAuGaugaaguucaUGACGACGaCGGCg -3' miRNA: 3'- -UCUUa-----CCGCCACU-C----------ACUGCUGC-GUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 198373 | 0.71 | 0.858824 |
Target: 5'- ---cUGGCgcaGGUGGGUGGCG-CGCGGg -3' miRNA: 3'- ucuuACCG---CCACUCACUGCuGCGUCg -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 1973 | 0.71 | 0.858824 |
Target: 5'- gGGGAcGGCGGcGGG-GACGACGUcccgccAGCg -3' miRNA: 3'- -UCUUaCCGCCaCUCaCUGCUGCG------UCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 152313 | 0.71 | 0.851152 |
Target: 5'- ----cGGCGGUGgugacuggggacGGUGAUGAUGCuGCu -3' miRNA: 3'- ucuuaCCGCCAC------------UCACUGCUGCGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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