miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1725 5' -54 NC_001347.2 + 31 0.66 0.981527
Target:  5'- ----cGGCGGUGuuuugGGUGugucGgGGCGCGGCc -3'
miRNA:   3'- ucuuaCCGCCAC-----UCAC----UgCUGCGUCG- -5'
1725 5' -54 NC_001347.2 + 180 0.72 0.810045
Target:  5'- cGGGcguGUGGCGGgugugccggcgGGGUGugGugGCGGg -3'
miRNA:   3'- -UCU---UACCGCCa----------CUCACugCugCGUCg -5'
1725 5' -54 NC_001347.2 + 1734 0.68 0.955806
Target:  5'- ----cGGCGGUGGGccgGcACGACGguGg -3'
miRNA:   3'- ucuuaCCGCCACUCa--C-UGCUGCguCg -5'
1725 5' -54 NC_001347.2 + 1973 0.71 0.858824
Target:  5'- gGGGAcGGCGGcGGG-GACGACGUcccgccAGCg -3'
miRNA:   3'- -UCUUaCCGCCaCUCaCUGCUGCG------UCG- -5'
1725 5' -54 NC_001347.2 + 2151 0.67 0.977145
Target:  5'- ----cGGUGGUcGG-GGCgGACGCGGCa -3'
miRNA:   3'- ucuuaCCGCCAcUCaCUG-CUGCGUCG- -5'
1725 5' -54 NC_001347.2 + 7876 0.7 0.906672
Target:  5'- cGGAAacGGCGGU-AGUGACcagguggucaGugGCGGCg -3'
miRNA:   3'- -UCUUa-CCGCCAcUCACUG----------CugCGUCG- -5'
1725 5' -54 NC_001347.2 + 7951 0.67 0.974688
Target:  5'- ----aGGUGGUGcgacugacGGUGGCGGCgGCAGa -3'
miRNA:   3'- ucuuaCCGCCAC--------UCACUGCUG-CGUCg -5'
1725 5' -54 NC_001347.2 + 13932 0.69 0.929089
Target:  5'- gAGAGUauaaacuggGGCGGgcgcgGGGUGGCGAaGCGGg -3'
miRNA:   3'- -UCUUA---------CCGCCa----CUCACUGCUgCGUCg -5'
1725 5' -54 NC_001347.2 + 17221 0.67 0.976427
Target:  5'- ---uUGGCGGacgaUGAGgagcagggagaggaUGAUGACGaCAGCg -3'
miRNA:   3'- ucuuACCGCC----ACUC--------------ACUGCUGC-GUCG- -5'
1725 5' -54 NC_001347.2 + 29737 0.72 0.792454
Target:  5'- --uGUGGUGGcUGGGaGugGugGCGGCa -3'
miRNA:   3'- ucuUACCGCC-ACUCaCugCugCGUCG- -5'
1725 5' -54 NC_001347.2 + 39940 0.66 0.986877
Target:  5'- cGuGUGGUGcG-GAG-GACGGCGaCGGCg -3'
miRNA:   3'- uCuUACCGC-CaCUCaCUGCUGC-GUCG- -5'
1725 5' -54 NC_001347.2 + 44048 0.67 0.962927
Target:  5'- -cGGUGGUGGcgcuggGGGUGGCGGCaGUGGUa -3'
miRNA:   3'- ucUUACCGCCa-----CUCACUGCUG-CGUCG- -5'
1725 5' -54 NC_001347.2 + 59034 0.67 0.968316
Target:  5'- cAGcAGUGGCGGagGAgcauccGUGACcucgagccaccaugGGCGCGGCg -3'
miRNA:   3'- -UC-UUACCGCCa-CU------CACUG--------------CUGCGUCG- -5'
1725 5' -54 NC_001347.2 + 63063 0.71 0.872127
Target:  5'- uGggUGGCGGaggacugccggcGGGUGugGGCuCGGCa -3'
miRNA:   3'- uCuuACCGCCa-----------CUCACugCUGcGUCG- -5'
1725 5' -54 NC_001347.2 + 65727 0.72 0.801324
Target:  5'- ----cGGCGGUgGAG-GGCG-CGCGGCa -3'
miRNA:   3'- ucuuaCCGCCA-CUCaCUGCuGCGUCG- -5'
1725 5' -54 NC_001347.2 + 66788 0.67 0.969206
Target:  5'- ----cGaCGGUG-GUGGCGGCgGCGGCa -3'
miRNA:   3'- ucuuaCcGCCACuCACUGCUG-CGUCG- -5'
1725 5' -54 NC_001347.2 + 66978 0.7 0.906672
Target:  5'- ----cGGUGGUgacGAGUGGCGGacaUGCGGCu -3'
miRNA:   3'- ucuuaCCGCCA---CUCACUGCU---GCGUCG- -5'
1725 5' -54 NC_001347.2 + 75407 0.75 0.667538
Target:  5'- gGGAGcGGCGGcc-GUGGCGGCgGCAGCg -3'
miRNA:   3'- -UCUUaCCGCCacuCACUGCUG-CGUCG- -5'
1725 5' -54 NC_001347.2 + 77095 0.7 0.900495
Target:  5'- gAGGA-GGCGGagGAGUGAaCGGucgucguugcCGCGGCg -3'
miRNA:   3'- -UCUUaCCGCCa-CUCACU-GCU----------GCGUCG- -5'
1725 5' -54 NC_001347.2 + 80882 1.11 0.005399
Target:  5'- uAGAAUGGCGGUGAGUGACGACGCAGCc -3'
miRNA:   3'- -UCUUACCGCCACUCACUGCUGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.