Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1725 | 5' | -54 | NC_001347.2 | + | 172116 | 0.75 | 0.637356 |
Target: 5'- ---cUGGCGGUGGGUcccGACGACGagguGGCg -3' miRNA: 3'- ucuuACCGCCACUCA---CUGCUGCg---UCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 191653 | 0.67 | 0.969206 |
Target: 5'- ----aGGCcgaacGGUGAaucuuggcGUGGCGcACGCAGCg -3' miRNA: 3'- ucuuaCCG-----CCACU--------CACUGC-UGCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 7951 | 0.67 | 0.974688 |
Target: 5'- ----aGGUGGUGcgacugacGGUGGCGGCgGCAGa -3' miRNA: 3'- ucuuaCCGCCAC--------UCACUGCUG-CGUCg -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 66788 | 0.67 | 0.969206 |
Target: 5'- ----cGaCGGUG-GUGGCGGCgGCGGCa -3' miRNA: 3'- ucuuaCcGCCACuCACUGCUG-CGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 59034 | 0.67 | 0.968316 |
Target: 5'- cAGcAGUGGCGGagGAgcauccGUGACcucgagccaccaugGGCGCGGCg -3' miRNA: 3'- -UC-UUACCGCCa-CU------CACUG--------------CUGCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 44048 | 0.67 | 0.962927 |
Target: 5'- -cGGUGGUGGcgcuggGGGUGGCGGCaGUGGUa -3' miRNA: 3'- ucUUACCGCCa-----CUCACUGCUG-CGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 229511 | 0.68 | 0.955806 |
Target: 5'- ----cGGCGGUGuuuugGGUGugucGgGGCGCGGCg -3' miRNA: 3'- ucuuaCCGCCAC-----UCAC----UgCUGCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 108011 | 0.68 | 0.951919 |
Target: 5'- -cGGUGGUGGUGuGUGAUGGggUGUGGUg -3' miRNA: 3'- ucUUACCGCCACuCACUGCU--GCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 1734 | 0.68 | 0.955806 |
Target: 5'- ----cGGCGGUGGGccgGcACGACGguGg -3' miRNA: 3'- ucuuaCCGCCACUCa--C-UGCUGCguCg -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 17221 | 0.67 | 0.976427 |
Target: 5'- ---uUGGCGGacgaUGAGgagcagggagaggaUGAUGACGaCAGCg -3' miRNA: 3'- ucuuACCGCC----ACUC--------------ACUGCUGC-GUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 173660 | 0.67 | 0.974688 |
Target: 5'- aGGAgGUGGCGGcG-GUGGCGGCaagaAGCa -3' miRNA: 3'- -UCU-UACCGCCaCuCACUGCUGcg--UCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 150594 | 0.67 | 0.977145 |
Target: 5'- ----cGGCaGU-AGUGGCGGCGuCGGCg -3' miRNA: 3'- ucuuaCCGcCAcUCACUGCUGC-GUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 140543 | 0.66 | 0.986877 |
Target: 5'- gGGuuUGGaCGGcaaaGGUGACGACGgGGUu -3' miRNA: 3'- -UCuuACC-GCCac--UCACUGCUGCgUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 154285 | 0.66 | 0.986877 |
Target: 5'- uGAGUGGCguGGUGcucaUGACGcCGguGCc -3' miRNA: 3'- uCUUACCG--CCACuc--ACUGCuGCguCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 155598 | 0.66 | 0.983465 |
Target: 5'- gAGGggGGaGGUG-GUGACGACGaggaCGGUg -3' miRNA: 3'- -UCUuaCCgCCACuCACUGCUGC----GUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 159267 | 0.66 | 0.983279 |
Target: 5'- ----aGGCGGcGAGgcgaaacuggugcUGGCGGCGCcgGGCg -3' miRNA: 3'- ucuuaCCGCCaCUC-------------ACUGCUGCG--UCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 31 | 0.66 | 0.981527 |
Target: 5'- ----cGGCGGUGuuuugGGUGugucGgGGCGCGGCc -3' miRNA: 3'- ucuuaCCGCCAC-----UCAC----UgCUGCGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 156781 | 0.66 | 0.979423 |
Target: 5'- ---cUGGCGG-GAGaagggaaGGCGGCaGCGGCa -3' miRNA: 3'- ucuuACCGCCaCUCa------CUGCUG-CGUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 152354 | 0.66 | 0.979423 |
Target: 5'- gAGAcUGGUGGUGAGaguaGugGugG-GGCu -3' miRNA: 3'- -UCUuACCGCCACUCa---CugCugCgUCG- -5' |
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1725 | 5' | -54 | NC_001347.2 | + | 2151 | 0.67 | 0.977145 |
Target: 5'- ----cGGUGGUcGG-GGCgGACGCGGCa -3' miRNA: 3'- ucuuaCCGCCAcUCaCUG-CUGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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