miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17272 3' -45.9 NC_004367.1 + 45466 0.66 0.999972
Target:  5'- aUGGAggagauaAGAGUUugGGUACAUGUg---GCa -3'
miRNA:   3'- gACCU-------UCUCAA--UCGUGUACAacuaCG- -5'
17272 3' -45.9 NC_004367.1 + 11609 0.67 0.999745
Target:  5'- -cGGAAGAGUauGCGCGUcUUGG-GCu -3'
miRNA:   3'- gaCCUUCUCAauCGUGUAcAACUaCG- -5'
17272 3' -45.9 NC_004367.1 + 20605 0.69 0.998999
Target:  5'- -gGGAAGGGUUaAGCACAa--UGAUGa -3'
miRNA:   3'- gaCCUUCUCAA-UCGUGUacaACUACg -5'
17272 3' -45.9 NC_004367.1 + 40252 0.74 0.968339
Target:  5'- uUGGAGGGGaUAGCAUcggggaguAUGUcGAUGCu -3'
miRNA:   3'- gACCUUCUCaAUCGUG--------UACAaCUACG- -5'
17272 3' -45.9 NC_004367.1 + 20820 1.13 0.014636
Target:  5'- cCUGGAAGAGUUAGCACAUGUUGAUGCc -3'
miRNA:   3'- -GACCUUCUCAAUCGUGUACAACUACG- -5'
17272 3' -45.9 NC_004367.1 + 11375 0.76 0.916113
Target:  5'- gUGGggGAGUUGGCGguguCAggggGUUGGUcGCg -3'
miRNA:   3'- gACCuuCUCAAUCGU----GUa---CAACUA-CG- -5'
17272 3' -45.9 NC_004367.1 + 108793 0.76 0.92224
Target:  5'- -gGGAGGAGaugaagcGCACAUGaUGAUGCu -3'
miRNA:   3'- gaCCUUCUCaau----CGUGUACaACUACG- -5'
17272 3' -45.9 NC_004367.1 + 70031 0.69 0.999189
Target:  5'- gUGGAAGAGgcggUAGC-CGUGggaGAgGCg -3'
miRNA:   3'- gACCUUCUCa---AUCGuGUACaa-CUaCG- -5'
17272 3' -45.9 NC_004367.1 + 136724 0.67 0.999745
Target:  5'- gUGGAAGcaaggaacacauAGUUAGaCACAUGgauaGAUGUu -3'
miRNA:   3'- gACCUUC------------UCAAUC-GUGUACaa--CUACG- -5'
17272 3' -45.9 NC_004367.1 + 35095 0.67 0.999884
Target:  5'- gUGGu-GAG--GGCACGUGUUGAaaacUGUg -3'
miRNA:   3'- gACCuuCUCaaUCGUGUACAACU----ACG- -5'
17272 3' -45.9 NC_004367.1 + 45963 0.66 0.999972
Target:  5'- uUGGAGGGugcguUUAGCACGgagcuuaUGggUGAUGCu -3'
miRNA:   3'- gACCUUCUc----AAUCGUGU-------ACa-ACUACG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.