miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17273 3' -60.7 NC_004367.1 + 121118 0.67 0.657348
Target:  5'- gUCCCCGaaacCCCcaagGGGCGGccgGGUCCCUa -3'
miRNA:   3'- -AGGGGCa---GGGcg--CCUGUCa--UCAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 124027 0.67 0.657348
Target:  5'- gUCCCCGaaacCCCcaagGGGCGGccgGGUCCCUa -3'
miRNA:   3'- -AGGGGCa---GGGcg--CCUGUCa--UCAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 126936 0.67 0.657348
Target:  5'- gUCCCCGaaacCCCcaagGGGCGGccgGGUCCCUa -3'
miRNA:   3'- -AGGGGCa---GGGcg--CCUGUCa--UCAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 129845 0.67 0.657348
Target:  5'- gUCCCCGaaacCCCcaagGGGCGGccgGGUCCCUa -3'
miRNA:   3'- -AGGGGCa---GGGcg--CCUGUCa--UCAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 22036 0.68 0.641704
Target:  5'- gCUCCGgagccugccUCCCGCGGGCuucuuugcagggcuGUAGggguuUCCCCg -3'
miRNA:   3'- aGGGGC---------AGGGCGCCUGu-------------CAUC-----AGGGG- -5'
17273 3' -60.7 NC_004367.1 + 12902 0.68 0.627021
Target:  5'- aUCUUCGUCCCGUugugaaaacacagGGGCGGcucUGGaCCCCu -3'
miRNA:   3'- -AGGGGCAGGGCG-------------CCUGUC---AUCaGGGG- -5'
17273 3' -60.7 NC_004367.1 + 115399 0.68 0.618214
Target:  5'- gUCCUCagaCCGCGGACAauaAGUCCCa -3'
miRNA:   3'- -AGGGGcagGGCGCCUGUca-UCAGGGg -5'
17273 3' -60.7 NC_004367.1 + 26739 0.69 0.569555
Target:  5'- --aCCGcCCCGCGGACAGg---CCaCCa -3'
miRNA:   3'- aggGGCaGGGCGCCUGUCaucaGG-GG- -5'
17273 3' -60.7 NC_004367.1 + 55859 0.7 0.522832
Target:  5'- gUCCgCGggacggguacaacugUCCGCGGGCGGggacguGUCCCCc -3'
miRNA:   3'- -AGGgGCa--------------GGGCGCCUGUCau----CAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 56479 0.73 0.329767
Target:  5'- gCUCCGcCCUGUGGGuuGUAGUCCCa -3'
miRNA:   3'- aGGGGCaGGGCGCCUguCAUCAGGGg -5'
17273 3' -60.7 NC_004367.1 + 115655 0.78 0.178929
Target:  5'- gUCCCCGUCCUGCGGACugagggcagcuguccAcGUAccaugcccacucGUCCCCa -3'
miRNA:   3'- -AGGGGCAGGGCGCCUG---------------U-CAU------------CAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 56253 0.82 0.090708
Target:  5'- gUCCCCGUCCCGCGGACAuuug-CCCa -3'
miRNA:   3'- -AGGGGCAGGGCGCCUGUcaucaGGGg -5'
17273 3' -60.7 NC_004367.1 + 22682 0.82 0.090708
Target:  5'- gUCCCCGUCCCGCGGACAuuug-CCCa -3'
miRNA:   3'- -AGGGGCAGGGCGCCUGUcaucaGGGg -5'
17273 3' -60.7 NC_004367.1 + 22406 0.86 0.051574
Target:  5'- ---nCGUCCCGCGGACAGUuGUCCCCg -3'
miRNA:   3'- agggGCAGGGCGCCUGUCAuCAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 115739 0.91 0.023551
Target:  5'- gUCCCCGUCUCGCGGACAacuGUCCCCg -3'
miRNA:   3'- -AGGGGCAGGGCGCCUGUcauCAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 56044 0.94 0.014272
Target:  5'- gUCCCCGUCCCGCGGACAGUuguacccGUCCCg -3'
miRNA:   3'- -AGGGGCAGGGCGCCUGUCAu------CAGGGg -5'
17273 3' -60.7 NC_004367.1 + 115697 0.96 0.010669
Target:  5'- gUCCCCGUCCCGCGGACAacuGUCCCCg -3'
miRNA:   3'- -AGGGGCAGGGCGCCUGUcauCAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 56002 1.04 0.002685
Target:  5'- gUCCCCGUCCCGCGGACAGUuGUCCCCg -3'
miRNA:   3'- -AGGGGCAGGGCGCCUGUCAuCAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 22431 1.12 0.000811
Target:  5'- gUCCCCGUCCCGCGGACAGUAGUCCCCg -3'
miRNA:   3'- -AGGGGCAGGGCGCCUGUCAUCAGGGG- -5'
17273 3' -60.7 NC_004367.1 + 22473 1.12 0.000811
Target:  5'- gUCCCCGUCCCGCGGACAGUAGUCCCCg -3'
miRNA:   3'- -AGGGGCAGGGCGCCUGUCAUCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.