miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17273 5' -59.2 NC_004367.1 + 138547 0.66 0.791861
Target:  5'- -gGGUGcGUCaCCGUCUCGCGG-CGGg -3'
miRNA:   3'- ugUCAU-CAGgGGCAGGGCGCCuGUCa -5'
17273 5' -59.2 NC_004367.1 + 22434 0.68 0.667814
Target:  5'- ---nUAGUCCCCGUCCCGCGn----- -3'
miRNA:   3'- ugucAUCAGGGGCAGGGCGCcuguca -5'
17273 5' -59.2 NC_004367.1 + 26755 0.68 0.637852
Target:  5'- ----cAGUCCaaccuggacaaCCGcCCCGCGGACAGg -3'
miRNA:   3'- ugucaUCAGG-----------GGCaGGGCGCCUGUCa -5'
17273 5' -59.2 NC_004367.1 + 115744 0.77 0.224067
Target:  5'- gACAc--GUCCCCGUCUCGCGGACAa- -3'
miRNA:   3'- -UGUcauCAGGGGCAGGGCGCCUGUca -5'
17273 5' -59.2 NC_004367.1 + 115666 0.8 0.155235
Target:  5'- cGCGGacaacuGUCCCCGUCCUGCGGACuGa -3'
miRNA:   3'- -UGUCau----CAGGGGCAGGGCGCCUGuCa -5'
17273 5' -59.2 NC_004367.1 + 22390 0.81 0.126902
Target:  5'- -----uGUCCCCGUCCCGCGGACAu- -3'
miRNA:   3'- ugucauCAGGGGCAGGGCGCCUGUca -5'
17273 5' -59.2 NC_004367.1 + 55982 0.81 0.126902
Target:  5'- -----uGUCCCCGUCCCGCGGACAu- -3'
miRNA:   3'- ugucauCAGGGGCAGGGCGCCUGUca -5'
17273 5' -59.2 NC_004367.1 + 56258 0.82 0.111705
Target:  5'- gACAc--GUCCCCGUCCCGCGGACAu- -3'
miRNA:   3'- -UGUcauCAGGGGCAGGGCGCCUGUca -5'
17273 5' -59.2 NC_004367.1 + 22687 0.82 0.111705
Target:  5'- gACAc--GUCCCCGUCCCGCGGACAu- -3'
miRNA:   3'- -UGUcauCAGGGGCAGGGCGCCUGUca -5'
17273 5' -59.2 NC_004367.1 + 115708 0.85 0.066441
Target:  5'- cGCGGacaacuGUCCCCGUCCCGCGGACAa- -3'
miRNA:   3'- -UGUCau----CAGGGGCAGGGCGCCUGUca -5'
17273 5' -59.2 NC_004367.1 + 56049 0.88 0.042373
Target:  5'- gACAc--GUCCCCGUCCCGCGGACAGUu -3'
miRNA:   3'- -UGUcauCAGGGGCAGGGCGCCUGUCA- -5'
17273 5' -59.2 NC_004367.1 + 56009 0.98 0.007986
Target:  5'- gACAGUuGUCCCCGUCCCGCGGACAGUu -3'
miRNA:   3'- -UGUCAuCAGGGGCAGGGCGCCUGUCA- -5'
17273 5' -59.2 NC_004367.1 + 22417 1.06 0.002355
Target:  5'- gACAGUAGUCCCCGUCCCGCGGACAGUu -3'
miRNA:   3'- -UGUCAUCAGGGGCAGGGCGCCUGUCA- -5'
17273 5' -59.2 NC_004367.1 + 22459 1.07 0.002001
Target:  5'- gACAGUAGUCCCCGUCCCGCGGACAGUa -3'
miRNA:   3'- -UGUCAUCAGGGGCAGGGCGCCUGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.