Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17273 | 5' | -59.2 | NC_004367.1 | + | 138547 | 0.66 | 0.791861 |
Target: 5'- -gGGUGcGUCaCCGUCUCGCGG-CGGg -3' miRNA: 3'- ugUCAU-CAGgGGCAGGGCGCCuGUCa -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 22434 | 0.68 | 0.667814 |
Target: 5'- ---nUAGUCCCCGUCCCGCGn----- -3' miRNA: 3'- ugucAUCAGGGGCAGGGCGCcuguca -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 26755 | 0.68 | 0.637852 |
Target: 5'- ----cAGUCCaaccuggacaaCCGcCCCGCGGACAGg -3' miRNA: 3'- ugucaUCAGG-----------GGCaGGGCGCCUGUCa -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 115744 | 0.77 | 0.224067 |
Target: 5'- gACAc--GUCCCCGUCUCGCGGACAa- -3' miRNA: 3'- -UGUcauCAGGGGCAGGGCGCCUGUca -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 115666 | 0.8 | 0.155235 |
Target: 5'- cGCGGacaacuGUCCCCGUCCUGCGGACuGa -3' miRNA: 3'- -UGUCau----CAGGGGCAGGGCGCCUGuCa -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 22390 | 0.81 | 0.126902 |
Target: 5'- -----uGUCCCCGUCCCGCGGACAu- -3' miRNA: 3'- ugucauCAGGGGCAGGGCGCCUGUca -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 55982 | 0.81 | 0.126902 |
Target: 5'- -----uGUCCCCGUCCCGCGGACAu- -3' miRNA: 3'- ugucauCAGGGGCAGGGCGCCUGUca -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 22687 | 0.82 | 0.111705 |
Target: 5'- gACAc--GUCCCCGUCCCGCGGACAu- -3' miRNA: 3'- -UGUcauCAGGGGCAGGGCGCCUGUca -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 56258 | 0.82 | 0.111705 |
Target: 5'- gACAc--GUCCCCGUCCCGCGGACAu- -3' miRNA: 3'- -UGUcauCAGGGGCAGGGCGCCUGUca -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 115708 | 0.85 | 0.066441 |
Target: 5'- cGCGGacaacuGUCCCCGUCCCGCGGACAa- -3' miRNA: 3'- -UGUCau----CAGGGGCAGGGCGCCUGUca -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 56049 | 0.88 | 0.042373 |
Target: 5'- gACAc--GUCCCCGUCCCGCGGACAGUu -3' miRNA: 3'- -UGUcauCAGGGGCAGGGCGCCUGUCA- -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 56009 | 0.98 | 0.007986 |
Target: 5'- gACAGUuGUCCCCGUCCCGCGGACAGUu -3' miRNA: 3'- -UGUCAuCAGGGGCAGGGCGCCUGUCA- -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 22417 | 1.06 | 0.002355 |
Target: 5'- gACAGUAGUCCCCGUCCCGCGGACAGUu -3' miRNA: 3'- -UGUCAUCAGGGGCAGGGCGCCUGUCA- -5' |
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17273 | 5' | -59.2 | NC_004367.1 | + | 22459 | 1.07 | 0.002001 |
Target: 5'- gACAGUAGUCCCCGUCCCGCGGACAGUa -3' miRNA: 3'- -UGUCAUCAGGGGCAGGGCGCCUGUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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