miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17276 3' -52.7 NC_004367.1 + 22353 0.66 0.978097
Target:  5'- cUCUUUGGCCAGcUAUG----CGUGGCc -3'
miRNA:   3'- -AGGAACCGGUCuAUAUagugGCGCCG- -5'
17276 3' -52.7 NC_004367.1 + 55945 0.66 0.978097
Target:  5'- cUCUUUGGCCAGcUAUG----CGUGGCc -3'
miRNA:   3'- -AGGAACCGGUCuAUAUagugGCGCCG- -5'
17276 3' -52.7 NC_004367.1 + 25292 0.66 0.972928
Target:  5'- cCCUUuucugaucagaGGCCAGAgc---CACCGCuGCa -3'
miRNA:   3'- aGGAA-----------CCGGUCUauauaGUGGCGcCG- -5'
17276 3' -52.7 NC_004367.1 + 80407 0.66 0.971218
Target:  5'- cUCUUGGUuuugacaacuaugcaCAGAguguggagGUCACUGUGGCa -3'
miRNA:   3'- aGGAACCG---------------GUCUaua-----UAGUGGCGCCG- -5'
17276 3' -52.7 NC_004367.1 + 37764 0.67 0.960048
Target:  5'- aCCgUGGCUGGGaagugaGCCGCGGUg -3'
miRNA:   3'- aGGaACCGGUCUauauagUGGCGCCG- -5'
17276 3' -52.7 NC_004367.1 + 122283 0.67 0.952237
Target:  5'- ----gGGUCAGggGUGUC-CCGCGGg -3'
miRNA:   3'- aggaaCCGGUCuaUAUAGuGGCGCCg -5'
17276 3' -52.7 NC_004367.1 + 125192 0.67 0.952237
Target:  5'- ----gGGUCAGggGUGUC-CCGCGGg -3'
miRNA:   3'- aggaaCCGGUCuaUAUAGuGGCGCCg -5'
17276 3' -52.7 NC_004367.1 + 128101 0.67 0.952237
Target:  5'- ----gGGUCAGggGUGUC-CCGCGGg -3'
miRNA:   3'- aggaaCCGGUCuaUAUAGuGGCGCCg -5'
17276 3' -52.7 NC_004367.1 + 86347 0.7 0.880359
Target:  5'- cCCUUGGUCuGAaaUAUGguaacaaaagugaauUgGCCGCGGCc -3'
miRNA:   3'- aGGAACCGGuCU--AUAU---------------AgUGGCGCCG- -5'
17276 3' -52.7 NC_004367.1 + 44196 0.71 0.819916
Target:  5'- gCCUUGGCCAGGaccugcuucacauUAUGcaggacucucUCACCacGUGGCu -3'
miRNA:   3'- aGGAACCGGUCU-------------AUAU----------AGUGG--CGCCG- -5'
17276 3' -52.7 NC_004367.1 + 45578 0.74 0.653066
Target:  5'- gCC-UGGCCAGG---GUCACaGCGGCa -3'
miRNA:   3'- aGGaACCGGUCUauaUAGUGgCGCCG- -5'
17276 3' -52.7 NC_004367.1 + 97295 0.75 0.621599
Target:  5'- aUCUUUGGUCGGAUAcuUCugUGUGGUg -3'
miRNA:   3'- -AGGAACCGGUCUAUauAGugGCGCCG- -5'
17276 3' -52.7 NC_004367.1 + 59183 0.78 0.45974
Target:  5'- uUUCUUGGCaAGAUAcAUCgccACCGCGGCg -3'
miRNA:   3'- -AGGAACCGgUCUAUaUAG---UGGCGCCG- -5'
17276 3' -52.7 NC_004367.1 + 37956 1.13 0.003231
Target:  5'- aUCCUUGGCCAGAUAUAUCACCGCGGCu -3'
miRNA:   3'- -AGGAACCGGUCUAUAUAGUGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.