Results 1 - 20 of 21 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 67748 | 0.66 | 0.999388 |
Target: 5'- -uGCCGCGGggAGAaugaauacGCGCAGAcCCAg- -3' miRNA: 3'- guCGGUGCCa-UCU--------UGUGUUUuGGUac -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 70019 | 0.66 | 0.99924 |
Target: 5'- gUAGCCGUGGgAGAgGCGCu-AGCCGUGg -3' miRNA: 3'- -GUCGGUGCCaUCU-UGUGuuUUGGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 7730 | 0.66 | 0.998601 |
Target: 5'- -cGCCGCGGgcguggagUGGAACACGGAGgUAg- -3' miRNA: 3'- guCGGUGCC--------AUCUUGUGUUUUgGUac -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 14673 | 0.67 | 0.998306 |
Target: 5'- aUAGCCgaaACGGUGacccuacAAgGCAGAACCAUGc -3' miRNA: 3'- -GUCGG---UGCCAUc------UUgUGUUUUGGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 61251 | 0.67 | 0.997959 |
Target: 5'- uGGCCACuGUcc-ACACAGAACCAc- -3' miRNA: 3'- gUCGGUGcCAucuUGUGUUUUGGUac -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 111360 | 0.67 | 0.997724 |
Target: 5'- aCGGCUaacagGCGGUGGGGCAUGAAuaagguguccagacuGCCAg- -3' miRNA: 3'- -GUCGG-----UGCCAUCUUGUGUUU---------------UGGUac -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 93217 | 0.67 | 0.997555 |
Target: 5'- uGGCCuuAUGGgccccGAACGCAAGagcgGCCAUGa -3' miRNA: 3'- gUCGG--UGCCau---CUUGUGUUU----UGGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 14829 | 0.67 | 0.997086 |
Target: 5'- uCGGCUAUGGUGaGGCAUggGaacagGCCGUGu -3' miRNA: 3'- -GUCGGUGCCAUcUUGUGuuU-----UGGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 69528 | 0.68 | 0.995925 |
Target: 5'- aAGCCcuucgGCGGUGGucguAUACuu-GCCAUGg -3' miRNA: 3'- gUCGG-----UGCCAUCu---UGUGuuuUGGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 27513 | 0.68 | 0.995925 |
Target: 5'- aAGCCuuugccucuaACGGUAGAACACcuu-CCAg- -3' miRNA: 3'- gUCGG----------UGCCAUCUUGUGuuuuGGUac -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 26468 | 0.68 | 0.995215 |
Target: 5'- gGGUCACaugGGGAC-CAAAACCGUGg -3' miRNA: 3'- gUCGGUGccaUCUUGuGUUUUGGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 2790 | 0.68 | 0.994408 |
Target: 5'- gGGgCGCGGUAGAgaACACAAAuuAUCAc- -3' miRNA: 3'- gUCgGUGCCAUCU--UGUGUUU--UGGUac -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 29953 | 0.69 | 0.988587 |
Target: 5'- uGGCC-CGaGUGGAugGCGGAAUCAa- -3' miRNA: 3'- gUCGGuGC-CAUCUugUGUUUUGGUac -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 27629 | 0.69 | 0.985241 |
Target: 5'- uGGCaCACGGUGGAACAaucuAugUAUGc -3' miRNA: 3'- gUCG-GUGCCAUCUUGUguu-UugGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 63214 | 0.69 | 0.985241 |
Target: 5'- cUAGCguCGGUGGAGCuggugACAGAuguCCAUGc -3' miRNA: 3'- -GUCGguGCCAUCUUG-----UGUUUu--GGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 62675 | 0.7 | 0.980294 |
Target: 5'- cCAGCCAUGcGUAGAACucuguauguccauUAGAGCCAg- -3' miRNA: 3'- -GUCGGUGC-CAUCUUGu------------GUUUUGGUac -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 91811 | 0.7 | 0.978641 |
Target: 5'- aGGCCAUGG-AGAACauacacgGCGAGACCuAUGc -3' miRNA: 3'- gUCGGUGCCaUCUUG-------UGUUUUGG-UAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 37780 | 0.71 | 0.959296 |
Target: 5'- gAGCCGCGGUgauauaucuggccaAGGAUGCcucaaAAGGCCGUGa -3' miRNA: 3'- gUCGGUGCCA--------------UCUUGUG-----UUUUGGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 112100 | 0.72 | 0.956535 |
Target: 5'- uUAGCCaAUGGU-GAACACcuagAAAACCGUGu -3' miRNA: 3'- -GUCGG-UGCCAuCUUGUG----UUUUGGUAC- -5' |
|||||||
17276 | 5' | -48.3 | NC_004367.1 | + | 672 | 0.73 | 0.907562 |
Target: 5'- uUAGCCACGGUGGucCACucagucuccgccggGGAGCCAUc -3' miRNA: 3'- -GUCGGUGCCAUCuuGUG--------------UUUUGGUAc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home