Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17277 | 3' | -51.5 | NC_004367.1 | + | 40099 | 1.11 | 0.006012 |
Target: 5'- cACGUCCACGACAGUUUGAUCCACCACg -3' miRNA: 3'- -UGCAGGUGCUGUCAAACUAGGUGGUG- -5' |
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17277 | 3' | -51.5 | NC_004367.1 | + | 65764 | 0.77 | 0.558811 |
Target: 5'- aGCGUguccaccCCACGuaACGGUgugGAUCCACCACg -3' miRNA: 3'- -UGCA-------GGUGC--UGUCAaa-CUAGGUGGUG- -5' |
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17277 | 3' | -51.5 | NC_004367.1 | + | 58268 | 0.71 | 0.864635 |
Target: 5'- aAUGUCCGCuACAGUUuccuUGAUUCACCcCg -3' miRNA: 3'- -UGCAGGUGcUGUCAA----ACUAGGUGGuG- -5' |
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17277 | 3' | -51.5 | NC_004367.1 | + | 97334 | 0.69 | 0.949716 |
Target: 5'- cUGUCCcgcuuuaagggaGCGACAGUauuccUCCACCGCa -3' miRNA: 3'- uGCAGG------------UGCUGUCAaacu-AGGUGGUG- -5' |
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17277 | 3' | -51.5 | NC_004367.1 | + | 39874 | 0.69 | 0.929896 |
Target: 5'- --uUCCAUGAagcgaggggacuaCAGUUUGAggCCGCCACu -3' miRNA: 3'- ugcAGGUGCU-------------GUCAAACUa-GGUGGUG- -5' |
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17277 | 3' | -51.5 | NC_004367.1 | + | 110821 | 0.67 | 0.974169 |
Target: 5'- aGCGaCCACGGacauuuCAGUUUGuUCCAUgGCa -3' miRNA: 3'- -UGCaGGUGCU------GUCAAACuAGGUGgUG- -5' |
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17277 | 3' | -51.5 | NC_004367.1 | + | 29998 | 0.66 | 0.987017 |
Target: 5'- gUGUCCACccCGGggcGAUCCGCCGg -3' miRNA: 3'- uGCAGGUGcuGUCaaaCUAGGUGGUg -5' |
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17277 | 3' | -51.5 | NC_004367.1 | + | 105918 | 0.66 | 0.988561 |
Target: 5'- uCGUCCACGAgcuCAGUgaaaaucAUgCGCCGCa -3' miRNA: 3'- uGCAGGUGCU---GUCAaac----UAgGUGGUG- -5' |
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17277 | 3' | -51.5 | NC_004367.1 | + | 29648 | 0.66 | 0.989691 |
Target: 5'- gGCGUCCAUGACAcuaacuauGUUgGCCACu -3' miRNA: 3'- -UGCAGGUGCUGUcaaac---UAGgUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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