miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17277 5' -54.1 NC_004367.1 + 43434 0.66 0.952532
Target:  5'- gAGUGGUGGCUUUAcuCUGUGcauGUUgCg -3'
miRNA:   3'- gUCACCGCCGGAGUuuGACAU---CAGgG- -5'
17277 5' -54.1 NC_004367.1 + 126933 0.66 0.939189
Target:  5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3'
miRNA:   3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 124024 0.66 0.939189
Target:  5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3'
miRNA:   3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 121115 0.66 0.939189
Target:  5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3'
miRNA:   3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 128394 0.66 0.939189
Target:  5'- --cUGG-GGCCaUCGcGGCUGUAaGUCCCa -3'
miRNA:   3'- gucACCgCCGG-AGU-UUGACAU-CAGGG- -5'
17277 5' -54.1 NC_004367.1 + 125485 0.66 0.939189
Target:  5'- --cUGG-GGCCaUCGcGGCUGUAaGUCCCa -3'
miRNA:   3'- gucACCgCCGG-AGU-UUGACAU-CAGGG- -5'
17277 5' -54.1 NC_004367.1 + 122576 0.66 0.939189
Target:  5'- --cUGG-GGCCaUCGcGGCUGUAaGUCCCa -3'
miRNA:   3'- gucACCgCCGG-AGU-UUGACAU-CAGGG- -5'
17277 5' -54.1 NC_004367.1 + 129842 0.66 0.939189
Target:  5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3'
miRNA:   3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 121046 0.66 0.939189
Target:  5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3'
miRNA:   3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 126864 0.66 0.939189
Target:  5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3'
miRNA:   3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 123955 0.66 0.939189
Target:  5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3'
miRNA:   3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 129773 0.66 0.939189
Target:  5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3'
miRNA:   3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 89894 0.68 0.905894
Target:  5'- aGGUGGCaaGGCUUUggagAAACUGUGG-CUCg -3'
miRNA:   3'- gUCACCG--CCGGAG----UUUGACAUCaGGG- -5'
17277 5' -54.1 NC_004367.1 + 121670 0.7 0.823059
Target:  5'- aAGUGGaGGCCUgAAGCcggGUuaugaugcagGGUCCCg -3'
miRNA:   3'- gUCACCgCCGGAgUUUGa--CA----------UCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 48346 0.7 0.823059
Target:  5'- gAG-GGCaGUCUCAAA-UGUAGUCCUg -3'
miRNA:   3'- gUCaCCGcCGGAGUUUgACAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 127488 0.7 0.823059
Target:  5'- aAGUGGaGGCCUgAAGCcggGUuaugaugcagGGUCCCg -3'
miRNA:   3'- gUCACCgCCGGAgUUUGa--CA----------UCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 124579 0.7 0.823059
Target:  5'- aAGUGGaGGCCUgAAGCcggGUuaugaugcagGGUCCCg -3'
miRNA:   3'- gUCACCgCCGGAgUUUGa--CA----------UCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 28778 0.75 0.513869
Target:  5'- gAGUGGCGGaCUCGcccaAACUgGUGGUCUCa -3'
miRNA:   3'- gUCACCGCCgGAGU----UUGA-CAUCAGGG- -5'
17277 5' -54.1 NC_004367.1 + 40062 1.11 0.003083
Target:  5'- cCAGUGGCGGCCUCAAACUGUAGUCCCc -3'
miRNA:   3'- -GUCACCGCCGGAGUUUGACAUCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.