Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17277 | 5' | -54.1 | NC_004367.1 | + | 43434 | 0.66 | 0.952532 |
Target: 5'- gAGUGGUGGCUUUAcuCUGUGcauGUUgCg -3' miRNA: 3'- gUCACCGCCGGAGUuuGACAU---CAGgG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 121046 | 0.66 | 0.939189 |
Target: 5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3' miRNA: 3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 129842 | 0.66 | 0.939189 |
Target: 5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3' miRNA: 3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 126933 | 0.66 | 0.939189 |
Target: 5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3' miRNA: 3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 124024 | 0.66 | 0.939189 |
Target: 5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3' miRNA: 3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 121115 | 0.66 | 0.939189 |
Target: 5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3' miRNA: 3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 128394 | 0.66 | 0.939189 |
Target: 5'- --cUGG-GGCCaUCGcGGCUGUAaGUCCCa -3' miRNA: 3'- gucACCgCCGG-AGU-UUGACAU-CAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 125485 | 0.66 | 0.939189 |
Target: 5'- --cUGG-GGCCaUCGcGGCUGUAaGUCCCa -3' miRNA: 3'- gucACCgCCGG-AGU-UUGACAU-CAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 122576 | 0.66 | 0.939189 |
Target: 5'- --cUGG-GGCCaUCGcGGCUGUAaGUCCCa -3' miRNA: 3'- gucACCgCCGG-AGU-UUGACAU-CAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 129773 | 0.66 | 0.939189 |
Target: 5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3' miRNA: 3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 123955 | 0.66 | 0.939189 |
Target: 5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3' miRNA: 3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 126864 | 0.66 | 0.939189 |
Target: 5'- cCGGaGGCGGCCcgCcGGCc-UAGUCCCu -3' miRNA: 3'- -GUCaCCGCCGGa-GuUUGacAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 89894 | 0.68 | 0.905894 |
Target: 5'- aGGUGGCaaGGCUUUggagAAACUGUGG-CUCg -3' miRNA: 3'- gUCACCG--CCGGAG----UUUGACAUCaGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 124579 | 0.7 | 0.823059 |
Target: 5'- aAGUGGaGGCCUgAAGCcggGUuaugaugcagGGUCCCg -3' miRNA: 3'- gUCACCgCCGGAgUUUGa--CA----------UCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 127488 | 0.7 | 0.823059 |
Target: 5'- aAGUGGaGGCCUgAAGCcggGUuaugaugcagGGUCCCg -3' miRNA: 3'- gUCACCgCCGGAgUUUGa--CA----------UCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 121670 | 0.7 | 0.823059 |
Target: 5'- aAGUGGaGGCCUgAAGCcggGUuaugaugcagGGUCCCg -3' miRNA: 3'- gUCACCgCCGGAgUUUGa--CA----------UCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 48346 | 0.7 | 0.823059 |
Target: 5'- gAG-GGCaGUCUCAAA-UGUAGUCCUg -3' miRNA: 3'- gUCaCCGcCGGAGUUUgACAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 28778 | 0.75 | 0.513869 |
Target: 5'- gAGUGGCGGaCUCGcccaAACUgGUGGUCUCa -3' miRNA: 3'- gUCACCGCCgGAGU----UUGA-CAUCAGGG- -5' |
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17277 | 5' | -54.1 | NC_004367.1 | + | 40062 | 1.11 | 0.003083 |
Target: 5'- cCAGUGGCGGCCUCAAACUGUAGUCCCc -3' miRNA: 3'- -GUCACCGCCGGAGUUUGACAUCAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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