Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17278 | 5' | -48.9 | NC_004367.1 | + | 860 | 0.72 | 0.936207 |
Target: 5'- cUGA-AUCAGGAUCaa-UGCCGCugGCa -3' miRNA: 3'- -ACUgUAGUUCUAGgugAUGGUGugCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 3839 | 0.69 | 0.98214 |
Target: 5'- gGGCAggauuaAAGGUCCA-UACCACGgGCu -3' miRNA: 3'- aCUGUag----UUCUAGGUgAUGGUGUgCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 6319 | 0.66 | 0.998054 |
Target: 5'- gGAUAUaAGGAUCUuauaaagagcuGCUACCACAuuuUGCa -3' miRNA: 3'- aCUGUAgUUCUAGG-----------UGAUGGUGU---GCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 6974 | 0.66 | 0.998054 |
Target: 5'- uUGAC-UCGGGAUCCG--GgCACACGa -3' miRNA: 3'- -ACUGuAGUUCUAGGUgaUgGUGUGCg -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 12703 | 0.66 | 0.998383 |
Target: 5'- aGACAUUAgGGGUCCAgaGCCGCcccUGUg -3' miRNA: 3'- aCUGUAGU-UCUAGGUgaUGGUGu--GCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 19389 | 0.66 | 0.998902 |
Target: 5'- gGAUAUCAAGGuguaUCCACUgggguGCUGC-CGUu -3' miRNA: 3'- aCUGUAGUUCU----AGGUGA-----UGGUGuGCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 23462 | 0.68 | 0.991631 |
Target: 5'- gGGCGUCcAGAacgCCACUgaACCcgggcagGCGCGCu -3' miRNA: 3'- aCUGUAGuUCUa--GGUGA--UGG-------UGUGCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 37833 | 0.7 | 0.977551 |
Target: 5'- gUGACAUCGGucgccUCCAaacuCCGCACGCc -3' miRNA: 3'- -ACUGUAGUUcu---AGGUgau-GGUGUGCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 41003 | 1.14 | 0.006633 |
Target: 5'- gUGACAUCAAGAUCCACUACCACACGCg -3' miRNA: 3'- -ACUGUAGUUCUAGGUGAUGGUGUGCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 43874 | 0.68 | 0.992843 |
Target: 5'- aGACAcCGGGcUCCACgauCgGCACGUa -3' miRNA: 3'- aCUGUaGUUCuAGGUGau-GgUGUGCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 51334 | 0.69 | 0.984151 |
Target: 5'- gGACAUCccucauuccggAAGAcCCACUGCCGuggauCugGCu -3' miRNA: 3'- aCUGUAG-----------UUCUaGGUGAUGGU-----GugCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 53761 | 0.69 | 0.989162 |
Target: 5'- gUGGCcaGUCAAaGUCCGCauucACCACGCGg -3' miRNA: 3'- -ACUG--UAGUUcUAGGUGa---UGGUGUGCg -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 56824 | 0.67 | 0.995378 |
Target: 5'- gGGCGUCcAGAacgCCGCUgaACCcgggcagGCGCGCu -3' miRNA: 3'- aCUGUAGuUCUa--GGUGA--UGG-------UGUGCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 58774 | 0.69 | 0.985985 |
Target: 5'- aUGGCggCAAGcaccacAUCgGCUACCAuCACGUa -3' miRNA: 3'- -ACUGuaGUUC------UAGgUGAUGGU-GUGCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 61644 | 0.66 | 0.998902 |
Target: 5'- gGACAUCAAGAggUCCuuuucagaACUggACU-CACGCu -3' miRNA: 3'- aCUGUAGUUCU--AGG--------UGA--UGGuGUGCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 78632 | 0.66 | 0.998637 |
Target: 5'- gGGgGUUGAGGccuuguuUUCACUACUAUugGCa -3' miRNA: 3'- aCUgUAGUUCU-------AGGUGAUGGUGugCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 78928 | 0.72 | 0.941211 |
Target: 5'- uUGGCuagCAAuGUCCACUuuucgcuucACCGCAUGCg -3' miRNA: 3'- -ACUGua-GUUcUAGGUGA---------UGGUGUGCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 84203 | 0.7 | 0.969118 |
Target: 5'- aUGGCAUCcGGAUUCAcCUGCUGCGgGUu -3' miRNA: 3'- -ACUGUAGuUCUAGGU-GAUGGUGUgCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 96836 | 0.67 | 0.99767 |
Target: 5'- gUGAag-CGAGGUCCAUuUACCuACAgGCu -3' miRNA: 3'- -ACUguaGUUCUAGGUG-AUGG-UGUgCG- -5' |
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17278 | 5' | -48.9 | NC_004367.1 | + | 105440 | 0.68 | 0.994685 |
Target: 5'- -cGCAguaaAGGAguggaGCUGCCACGCGCa -3' miRNA: 3'- acUGUag--UUCUagg--UGAUGGUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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