miRNA: 3'- -ACUGua-GUUcUAGGUGA---------UGGUGUGCG- -5'
miRNA: 3'- -ACUgUAGUUCUAGgugAUGGUGugCG- -5'
miRNA: 3'- -ACUGUAGUUCUAGGUGAUGGUGUGCG- -5'
Results 21 - 23 of 23 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 17278 | 5' | -48.9 | NC_004367.1 | + | 78928 | 0.72 | 0.941211 |
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Target: 5'- uUGGCuagCAAuGUCCACUuuucgcuucACCGCAUGCg -3' miRNA: 3'- -ACUGua-GUUcUAGGUGA---------UGGUGUGCG- -5' |
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| 17278 | 5' | -48.9 | NC_004367.1 | + | 860 | 0.72 | 0.936207 |
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Target: 5'- cUGA-AUCAGGAUCaa-UGCCGCugGCa -3' miRNA: 3'- -ACUgUAGUUCUAGgugAUGGUGugCG- -5' |
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| 17278 | 5' | -48.9 | NC_004367.1 | + | 41003 | 1.14 | 0.006633 |
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Target: 5'- gUGACAUCAAGAUCCACUACCACACGCg -3' miRNA: 3'- -ACUGUAGUUCUAGGUGAUGGUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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