Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17279 | 3' | -53.4 | NC_004367.1 | + | 20023 | 0.68 | 0.899494 |
Target: 5'- aUUUCUGGGGUUgAGuACCUgcaguUCCACUUCu -3' miRNA: 3'- gAAAGGCCCUAG-UC-UGGA-----GGGUGAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 46293 | 0.67 | 0.929195 |
Target: 5'- --aUUCGGGGUCAGACaUUUCAcCUUCu -3' miRNA: 3'- gaaAGGCCCUAGUCUGgAGGGU-GAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 51727 | 1.1 | 0.004091 |
Target: 5'- aCUUUCCGGGAUCAGACCUCCCACUUCu -3' miRNA: 3'- -GAAAGGCCCUAGUCUGGAGGGUGAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 97252 | 0.68 | 0.92375 |
Target: 5'- gUUUCUGGGAUCAGcuGCCUUgUACc-- -3' miRNA: 3'- gAAAGGCCCUAGUC--UGGAGgGUGaag -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116676 | 0.76 | 0.542263 |
Target: 5'- uUUUCCGGGugccCAGGCCUCCCGg--- -3' miRNA: 3'- gAAAGGCCCua--GUCUGGAGGGUgaag -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116699 | 0.68 | 0.918056 |
Target: 5'- ---nCCGGGugccCAGGCCUCCCGg--- -3' miRNA: 3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116727 | 0.77 | 0.454097 |
Target: 5'- uUUUCCGGGugccCAGGCCUCCCGggUUUCc -3' miRNA: 3'- gAAAGGCCCua--GUCUGGAGGGU--GAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116753 | 0.76 | 0.542263 |
Target: 5'- uUUUCCGGGugccCAGGCCUCCCGg--- -3' miRNA: 3'- gAAAGGCCCua--GUCUGGAGGGUgaag -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116801 | 0.69 | 0.88591 |
Target: 5'- ---nCCGGGugccCAGGCCUCCCGgguUUUCc -3' miRNA: 3'- gaaaGGCCCua--GUCUGGAGGGU---GAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116830 | 0.76 | 0.49241 |
Target: 5'- gUUUCCGGGugccCAGGCCUCCCGgguUUUCc -3' miRNA: 3'- gAAAGGCCCua--GUCUGGAGGGU---GAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116852 | 0.68 | 0.918056 |
Target: 5'- ---nCCGGGugccCAGGCCUCCCGg--- -3' miRNA: 3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116880 | 0.77 | 0.454097 |
Target: 5'- uUUUCCGGGugccCAGGCCUCCCGggUUUCc -3' miRNA: 3'- gAAAGGCCCua--GUCUGGAGGGU--GAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116903 | 0.68 | 0.918056 |
Target: 5'- ---nCCGGGugccCAGGCCUCCCGg--- -3' miRNA: 3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116932 | 0.76 | 0.49241 |
Target: 5'- uUUUCCGGGugccCAGGCCUCCCGgguUUUCc -3' miRNA: 3'- gAAAGGCCCua--GUCUGGAGGGU---GAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116955 | 0.68 | 0.918056 |
Target: 5'- ---nCCGGGugccCAGGCCUCCCGg--- -3' miRNA: 3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 116984 | 0.76 | 0.49241 |
Target: 5'- uUUUCCGGGugccCAGGCCUCCCGgguUUUCc -3' miRNA: 3'- gAAAGGCCCua--GUCUGGAGGGU---GAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 117007 | 0.68 | 0.918056 |
Target: 5'- ---nCCGGGugccCAGGCCUCCCGg--- -3' miRNA: 3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 117036 | 0.76 | 0.49241 |
Target: 5'- uUUUCCGGGugccCAGGCCUCCCGgguUUUCc -3' miRNA: 3'- gAAAGGCCCua--GUCUGGAGGGU---GAAG- -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 117059 | 0.68 | 0.918056 |
Target: 5'- ---nCCGGGugccCAGGCCUCCCGg--- -3' miRNA: 3'- gaaaGGCCCua--GUCUGGAGGGUgaag -5' |
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17279 | 3' | -53.4 | NC_004367.1 | + | 117088 | 0.76 | 0.49241 |
Target: 5'- uUUUCCGGGugccCAGGCCUCCCGgguUUUCc -3' miRNA: 3'- gAAAGGCCCua--GUCUGGAGGGU---GAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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