Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17281 | 5' | -60.2 | NC_004367.1 | + | 23524 | 0.72 | 0.3768 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 142735 | 0.72 | 0.417877 |
Target: 5'- gCGCGGgaccCCUGGAgcgggggugGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU---------UGgACUGGUCCCGgC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 143718 | 0.72 | 0.392902 |
Target: 5'- gCGCGGgacCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU---GGACCU----------UGgACUGGUCCCGgC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56884 | 0.74 | 0.289841 |
Target: 5'- aCGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- -GCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 23444 | 0.81 | 0.118669 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCCGGGGCUGg -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGUCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 23505 | 1.02 | 0.004118 |
Target: 5'- cCGCGACCUGGAACCUGuCCAGGGCCGa -3' miRNA: 3'- -GCGCUGGACCUUGGACuGGUCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 116562 | 1.09 | 0.001295 |
Target: 5'- cCGCGACCUGGAACCUGACCAGGGCCGa -3' miRNA: 3'- -GCGCUGGACCUUGGACUGGUCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56867 | 1.09 | 0.001295 |
Target: 5'- cCGCGACCUGGAACCUGACCAGGGCCGa -3' miRNA: 3'- -GCGCUGGACCUUGGACUGGUCCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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