Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17281 | 5' | -60.2 | NC_004367.1 | + | 22433 | 0.71 | 0.461566 |
Target: 5'- gGCGACCUacauuugggaaGGGGCCgcGGCaUGGGGCCGa -3' miRNA: 3'- gCGCUGGA-----------CCUUGGa-CUG-GUCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 23382 | 0.66 | 0.731864 |
Target: 5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3' miRNA: 3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 23444 | 0.81 | 0.118669 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCCGGGGCUGg -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGUCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 23484 | 0.72 | 0.3768 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 23505 | 1.02 | 0.004118 |
Target: 5'- cCGCGACCUGGAACCUGuCCAGGGCCGa -3' miRNA: 3'- -GCGCUGGACCUUGGACuGGUCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 23524 | 0.72 | 0.3768 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 29502 | 0.68 | 0.614294 |
Target: 5'- aGUGAUUUGGuGACUguuaGACCAGGGUCu -3' miRNA: 3'- gCGCUGGACC-UUGGa---CUGGUCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 45564 | 0.69 | 0.555362 |
Target: 5'- -uCGugUaGGAuuguGCCUGGCCAGGGUCa -3' miRNA: 3'- gcGCugGaCCU----UGGACUGGUCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56004 | 0.71 | 0.461566 |
Target: 5'- gGCGACCUacauuugggaaGGGGCCgcGGCaUGGGGCCGa -3' miRNA: 3'- gCGCUGGA-----------CCUUGGa-CUG-GUCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56744 | 0.66 | 0.731864 |
Target: 5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3' miRNA: 3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56806 | 0.72 | 0.3768 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56846 | 0.72 | 0.3768 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56867 | 1.09 | 0.001295 |
Target: 5'- cCGCGACCUGGAACCUGACCAGGGCCGa -3' miRNA: 3'- -GCGCUGGACCUUGGACUGGUCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56884 | 0.74 | 0.289841 |
Target: 5'- aCGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- -GCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56925 | 0.72 | 0.3768 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 56965 | 0.72 | 0.3768 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 57005 | 0.72 | 0.3768 |
Target: 5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3' miRNA: 3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 116439 | 0.66 | 0.731864 |
Target: 5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3' miRNA: 3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 116562 | 1.09 | 0.001295 |
Target: 5'- cCGCGACCUGGAACCUGACCAGGGCCGa -3' miRNA: 3'- -GCGCUGGACCUUGGACUGGUCCCGGC- -5' |
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17281 | 5' | -60.2 | NC_004367.1 | + | 117333 | 0.66 | 0.712698 |
Target: 5'- gGgGACCUGuaugaggaccaGAACCUGaACUGGGGCg- -3' miRNA: 3'- gCgCUGGAC-----------CUUGGAC-UGGUCCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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