miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17281 5' -60.2 NC_004367.1 + 143063 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17281 5' -60.2 NC_004367.1 + 142735 0.72 0.417877
Target:  5'- gCGCGGgaccCCUGGAgcgggggugGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU---------UGgACUGGUCCCGgC- -5'
17281 5' -60.2 NC_004367.1 + 142408 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17281 5' -60.2 NC_004367.1 + 142080 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17281 5' -60.2 NC_004367.1 + 141752 0.7 0.479706
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCg- -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgc -5'
17281 5' -60.2 NC_004367.1 + 141425 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17281 5' -60.2 NC_004367.1 + 141097 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17281 5' -60.2 NC_004367.1 + 140769 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17281 5' -60.2 NC_004367.1 + 117333 0.66 0.712698
Target:  5'- gGgGACCUGuaugaggaccaGAACCUGaACUGGGGCg- -3'
miRNA:   3'- gCgCUGGAC-----------CUUGGAC-UGGUCCCGgc -5'
17281 5' -60.2 NC_004367.1 + 116562 1.09 0.001295
Target:  5'- cCGCGACCUGGAACCUGACCAGGGCCGa -3'
miRNA:   3'- -GCGCUGGACCUUGGACUGGUCCCGGC- -5'
17281 5' -60.2 NC_004367.1 + 116439 0.66 0.731864
Target:  5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3'
miRNA:   3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5'
17281 5' -60.2 NC_004367.1 + 57005 0.72 0.3768
Target:  5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3'
miRNA:   3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5'
17281 5' -60.2 NC_004367.1 + 56965 0.72 0.3768
Target:  5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3'
miRNA:   3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5'
17281 5' -60.2 NC_004367.1 + 56925 0.72 0.3768
Target:  5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3'
miRNA:   3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5'
17281 5' -60.2 NC_004367.1 + 56884 0.74 0.289841
Target:  5'- aCGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3'
miRNA:   3'- -GCG--CUGGACCUUGGa---CUGGuCCCGGc -5'
17281 5' -60.2 NC_004367.1 + 56867 1.09 0.001295
Target:  5'- cCGCGACCUGGAACCUGACCAGGGCCGa -3'
miRNA:   3'- -GCGCUGGACCUUGGACUGGUCCCGGC- -5'
17281 5' -60.2 NC_004367.1 + 56846 0.72 0.3768
Target:  5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3'
miRNA:   3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5'
17281 5' -60.2 NC_004367.1 + 56806 0.72 0.3768
Target:  5'- gGCcgGGCCUGGAGCCccacGGCC-GGGCCu -3'
miRNA:   3'- gCG--CUGGACCUUGGa---CUGGuCCCGGc -5'
17281 5' -60.2 NC_004367.1 + 56744 0.66 0.731864
Target:  5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3'
miRNA:   3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5'
17281 5' -60.2 NC_004367.1 + 56004 0.71 0.461566
Target:  5'- gGCGACCUacauuugggaaGGGGCCgcGGCaUGGGGCCGa -3'
miRNA:   3'- gCGCUGGA-----------CCUUGGa-CUG-GUCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.