miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17282 3' -59.5 NC_004367.1 + 123975 0.67 0.636646
Target:  5'- cAGGGGGUcCAGCCccuGGCCcgGAGgcgGCCc- -3'
miRNA:   3'- aUUCCCCA-GUCGG---CCGG--UUCa--CGGua -5'
17282 3' -59.5 NC_004367.1 + 129822 0.67 0.636646
Target:  5'- cAGGGGGUcCAGCCccuGGCCcgGAGgcgGCCc- -3'
miRNA:   3'- aUUCCCCA-GUCGG---CCGG--UUCa--CGGua -5'
17282 3' -59.5 NC_004367.1 + 126913 0.67 0.636646
Target:  5'- cAGGGGGUcCAGCCccuGGCCcgGAGgcgGCCc- -3'
miRNA:   3'- aUUCCCCA-GUCGG---CCGG--UUCa--CGGua -5'
17282 3' -59.5 NC_004367.1 + 124004 0.67 0.636646
Target:  5'- cAGGGGGUcCAGCCccuGGCCcgGAGgcgGCCc- -3'
miRNA:   3'- aUUCCCCA-GUCGG---CCGG--UUCa--CGGua -5'
17282 3' -59.5 NC_004367.1 + 121095 0.67 0.636646
Target:  5'- cAGGGGGUcCAGCCccuGGCCcgGAGgcgGCCc- -3'
miRNA:   3'- aUUCCCCA-GUCGG---CCGG--UUCa--CGGua -5'
17282 3' -59.5 NC_004367.1 + 121066 0.67 0.636646
Target:  5'- cAGGGGGUcCAGCCccuGGCCcgGAGgcgGCCc- -3'
miRNA:   3'- aUUCCCCA-GUCGG---CCGG--UUCa--CGGua -5'
17282 3' -59.5 NC_004367.1 + 126884 0.67 0.636646
Target:  5'- cAGGGGGUcCAGCCccuGGCCcgGAGgcgGCCc- -3'
miRNA:   3'- aUUCCCCA-GUCGG---CCGG--UUCa--CGGua -5'
17282 3' -59.5 NC_004367.1 + 129793 0.67 0.636646
Target:  5'- cAGGGGGUcCAGCCccuGGCCcgGAGgcgGCCc- -3'
miRNA:   3'- aUUCCCCA-GUCGG---CCGG--UUCa--CGGua -5'
17282 3' -59.5 NC_004367.1 + 146651 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 140752 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 149600 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 149272 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 148944 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 148617 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 148289 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 147961 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 147634 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 147306 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 146978 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5'
17282 3' -59.5 NC_004367.1 + 141080 0.67 0.616097
Target:  5'- -cGGGGGUgGGCgUGGCCGGGgcgGUCGc -3'
miRNA:   3'- auUCCCCAgUCG-GCCGGUUCa--CGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.