miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17282 5' -56.8 NC_004367.1 + 125669 0.66 0.879361
Target:  5'- gGGCU--CGCCu--GGGaCUUACAGCCg -3'
miRNA:   3'- gCUGGugGCGGcuuCCC-GAAUGUCGG- -5'
17282 5' -56.8 NC_004367.1 + 116 0.66 0.879361
Target:  5'- -aGCCACCGCCccccuuAGGuGCgcauUAGCCg -3'
miRNA:   3'- gcUGGUGGCGGcu----UCC-CGaau-GUCGG- -5'
17282 5' -56.8 NC_004367.1 + 128578 0.66 0.879361
Target:  5'- gGGCU--CGCCu--GGGaCUUACAGCCg -3'
miRNA:   3'- gCUGGugGCGGcuuCCC-GAAUGUCGG- -5'
17282 5' -56.8 NC_004367.1 + 23454 0.66 0.872226
Target:  5'- gGAgccCCACgGCCG--GGGCUggagccccACGGCCg -3'
miRNA:   3'- gCU---GGUGgCGGCuuCCCGAa-------UGUCGG- -5'
17282 5' -56.8 NC_004367.1 + 79533 0.66 0.864881
Target:  5'- gGAgCuCCuaGgUGggGGGCUUAUGGCCa -3'
miRNA:   3'- gCUgGuGG--CgGCuuCCCGAAUGUCGG- -5'
17282 5' -56.8 NC_004367.1 + 147706 0.67 0.85733
Target:  5'- --uCCACCGCCGAGGaaGGCgucccccCGGCg -3'
miRNA:   3'- gcuGGUGGCGGCUUC--CCGaau----GUCGg -5'
17282 5' -56.8 NC_004367.1 + 103197 0.67 0.841635
Target:  5'- uGACCACCGCCcu--GGCa-GCGGCa -3'
miRNA:   3'- gCUGGUGGCGGcuucCCGaaUGUCGg -5'
17282 5' -56.8 NC_004367.1 + 107939 0.67 0.841635
Target:  5'- uGACCAgCGuuGGAcGGGCacaagUGCGGgCg -3'
miRNA:   3'- gCUGGUgGCggCUU-CCCGa----AUGUCgG- -5'
17282 5' -56.8 NC_004367.1 + 136856 0.68 0.808065
Target:  5'- aGACaUGCaCGCCGAAGGGCcuUUAgAGgCg -3'
miRNA:   3'- gCUG-GUG-GCGGCUUCCCG--AAUgUCgG- -5'
17282 5' -56.8 NC_004367.1 + 57163 0.7 0.694569
Target:  5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3'
miRNA:   3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5'
17282 5' -56.8 NC_004367.1 + 57123 0.7 0.694569
Target:  5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3'
miRNA:   3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5'
17282 5' -56.8 NC_004367.1 + 57083 0.7 0.694569
Target:  5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3'
miRNA:   3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5'
17282 5' -56.8 NC_004367.1 + 57043 0.7 0.694569
Target:  5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3'
miRNA:   3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5'
17282 5' -56.8 NC_004367.1 + 57003 0.7 0.694569
Target:  5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3'
miRNA:   3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5'
17282 5' -56.8 NC_004367.1 + 23702 0.7 0.694569
Target:  5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3'
miRNA:   3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5'
17282 5' -56.8 NC_004367.1 + 57203 0.7 0.694569
Target:  5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3'
miRNA:   3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5'
17282 5' -56.8 NC_004367.1 + 91328 0.71 0.634089
Target:  5'- aGGCCACCGCUGAcaggauucuGGGUgaUUugGGCa -3'
miRNA:   3'- gCUGGUGGCGGCUu--------CCCG--AAugUCGg -5'
17282 5' -56.8 NC_004367.1 + 41448 0.72 0.553601
Target:  5'- uGACCcCCGCC--AGGGUc-GCAGCCa -3'
miRNA:   3'- gCUGGuGGCGGcuUCCCGaaUGUCGG- -5'
17282 5' -56.8 NC_004367.1 + 23642 0.72 0.553601
Target:  5'- aGGCC-CgGCCGuGGGGCUc-CAGCCc -3'
miRNA:   3'- gCUGGuGgCGGCuUCCCGAauGUCGG- -5'
17282 5' -56.8 NC_004367.1 + 69697 1.11 0.001781
Target:  5'- aCGACCACCGCCGAAGGGCUUACAGCCc -3'
miRNA:   3'- -GCUGGUGGCGGCUUCCCGAAUGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.