Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17282 | 5' | -56.8 | NC_004367.1 | + | 128578 | 0.66 | 0.879361 |
Target: 5'- gGGCU--CGCCu--GGGaCUUACAGCCg -3' miRNA: 3'- gCUGGugGCGGcuuCCC-GAAUGUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 116 | 0.66 | 0.879361 |
Target: 5'- -aGCCACCGCCccccuuAGGuGCgcauUAGCCg -3' miRNA: 3'- gcUGGUGGCGGcu----UCC-CGaau-GUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 125669 | 0.66 | 0.879361 |
Target: 5'- gGGCU--CGCCu--GGGaCUUACAGCCg -3' miRNA: 3'- gCUGGugGCGGcuuCCC-GAAUGUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 23454 | 0.66 | 0.872226 |
Target: 5'- gGAgccCCACgGCCG--GGGCUggagccccACGGCCg -3' miRNA: 3'- gCU---GGUGgCGGCuuCCCGAa-------UGUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 79533 | 0.66 | 0.864881 |
Target: 5'- gGAgCuCCuaGgUGggGGGCUUAUGGCCa -3' miRNA: 3'- gCUgGuGG--CgGCuuCCCGAAUGUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 147706 | 0.67 | 0.85733 |
Target: 5'- --uCCACCGCCGAGGaaGGCgucccccCGGCg -3' miRNA: 3'- gcuGGUGGCGGCUUC--CCGaau----GUCGg -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 103197 | 0.67 | 0.841635 |
Target: 5'- uGACCACCGCCcu--GGCa-GCGGCa -3' miRNA: 3'- gCUGGUGGCGGcuucCCGaaUGUCGg -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 107939 | 0.67 | 0.841635 |
Target: 5'- uGACCAgCGuuGGAcGGGCacaagUGCGGgCg -3' miRNA: 3'- gCUGGUgGCggCUU-CCCGa----AUGUCgG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 136856 | 0.68 | 0.808065 |
Target: 5'- aGACaUGCaCGCCGAAGGGCcuUUAgAGgCg -3' miRNA: 3'- gCUG-GUG-GCGGCUUCCCG--AAUgUCgG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 23702 | 0.7 | 0.694569 |
Target: 5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3' miRNA: 3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 57203 | 0.7 | 0.694569 |
Target: 5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3' miRNA: 3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 57163 | 0.7 | 0.694569 |
Target: 5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3' miRNA: 3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 57123 | 0.7 | 0.694569 |
Target: 5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3' miRNA: 3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 57083 | 0.7 | 0.694569 |
Target: 5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3' miRNA: 3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 57043 | 0.7 | 0.694569 |
Target: 5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3' miRNA: 3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 57003 | 0.7 | 0.694569 |
Target: 5'- aGGCC-CgGCCGuGGGGCUccaGGCCc -3' miRNA: 3'- gCUGGuGgCGGCuUCCCGAaugUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 91328 | 0.71 | 0.634089 |
Target: 5'- aGGCCACCGCUGAcaggauucuGGGUgaUUugGGCa -3' miRNA: 3'- gCUGGUGGCGGCUu--------CCCG--AAugUCGg -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 23642 | 0.72 | 0.553601 |
Target: 5'- aGGCC-CgGCCGuGGGGCUc-CAGCCc -3' miRNA: 3'- gCUGGuGgCGGCuUCCCGAauGUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 41448 | 0.72 | 0.553601 |
Target: 5'- uGACCcCCGCC--AGGGUc-GCAGCCa -3' miRNA: 3'- gCUGGuGGCGGcuUCCCGaaUGUCGG- -5' |
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17282 | 5' | -56.8 | NC_004367.1 | + | 69697 | 1.11 | 0.001781 |
Target: 5'- aCGACCACCGCCGAAGGGCUUACAGCCc -3' miRNA: 3'- -GCUGGUGGCGGCUUCCCGAAUGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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