miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17284 3' -52.4 NC_004367.1 + 81651 1.08 0.00551
Target:  5'- uAUGAGCUGCAGCAAAUGUGGCACUGGc -3'
miRNA:   3'- -UACUCGACGUCGUUUACACCGUGACC- -5'
17284 3' -52.4 NC_004367.1 + 22096 0.84 0.201853
Target:  5'- aGUGGGCUGCAGguGAguUGUGGCAgaGGg -3'
miRNA:   3'- -UACUCGACGUCguUU--ACACCGUgaCC- -5'
17284 3' -52.4 NC_004367.1 + 55689 0.82 0.247833
Target:  5'- aGUGGGCUGCAGguGAguUGUGGCAUaGGg -3'
miRNA:   3'- -UACUCGACGUCguUU--ACACCGUGaCC- -5'
17284 3' -52.4 NC_004367.1 + 128674 0.7 0.815685
Target:  5'- gGUGAGCc-CAGCGGAUGUGGUccucccaguuCUGGg -3'
miRNA:   3'- -UACUCGacGUCGUUUACACCGu---------GACC- -5'
17284 3' -52.4 NC_004367.1 + 125764 0.7 0.815685
Target:  5'- gGUGAGCc-CAGCGGAUGUGGUccucccaguuCUGGg -3'
miRNA:   3'- -UACUCGacGUCGUUUACACCGu---------GACC- -5'
17284 3' -52.4 NC_004367.1 + 122855 0.7 0.815685
Target:  5'- gGUGAGCc-CAGCGGAUGUGGUccucccaguuCUGGg -3'
miRNA:   3'- -UACUCGacGUCGUUUACACCGu---------GACC- -5'
17284 3' -52.4 NC_004367.1 + 67296 0.69 0.889136
Target:  5'- -gGAGCUGgaGGUAGAUGUGGcCACa-- -3'
miRNA:   3'- uaCUCGACg-UCGUUUACACC-GUGacc -5'
17284 3' -52.4 NC_004367.1 + 2406 0.68 0.902873
Target:  5'- cAUGcAGCUGguGUug--GUGGuCGCUGGu -3'
miRNA:   3'- -UAC-UCGACguCGuuuaCACC-GUGACC- -5'
17284 3' -52.4 NC_004367.1 + 52159 0.68 0.902873
Target:  5'- cUGAGCUGCaAGCAGu--UGGUugUGa -3'
miRNA:   3'- uACUCGACG-UCGUUuacACCGugACc -5'
17284 3' -52.4 NC_004367.1 + 65411 0.68 0.915582
Target:  5'- -cGGGCUGCAuccuauGUGAauGUGUGGaaaaACUGGg -3'
miRNA:   3'- uaCUCGACGU------CGUU--UACACCg---UGACC- -5'
17284 3' -52.4 NC_004367.1 + 25392 0.67 0.932681
Target:  5'- cUGuGCUGUGGCGGuggaguUGUGuGCgACUGGg -3'
miRNA:   3'- uACuCGACGUCGUUu-----ACAC-CG-UGACC- -5'
17284 3' -52.4 NC_004367.1 + 72331 0.66 0.966906
Target:  5'- cUGGGCccUGCAGUAcuuUGaUGGC-CUGGa -3'
miRNA:   3'- uACUCG--ACGUCGUuu-AC-ACCGuGACC- -5'
17284 3' -52.4 NC_004367.1 + 100089 0.66 0.970086
Target:  5'- gGUGGGCUGgGGaGGAgggGUGG-GCUGGg -3'
miRNA:   3'- -UACUCGACgUCgUUUa--CACCgUGACC- -5'
17284 3' -52.4 NC_004367.1 + 100053 0.66 0.970086
Target:  5'- gGUGGGCUGgGGaGGAgggGUGG-GCUGGg -3'
miRNA:   3'- -UACUCGACgUCgUUUa--CACCgUGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.