miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17285 3' -50.7 NC_004367.1 + 121279 0.66 0.992047
Target:  5'- gGCGGgCCGCCuccGGGcCAGGggCUGGa -3'
miRNA:   3'- -UGCCgGGCGGu--UUUuGUUCaaGACUa -5'
17285 3' -50.7 NC_004367.1 + 124188 0.66 0.992047
Target:  5'- gGCGGgCCGCCuccGGGcCAGGggCUGGa -3'
miRNA:   3'- -UGCCgGGCGGu--UUUuGUUCaaGACUa -5'
17285 3' -50.7 NC_004367.1 + 127097 0.66 0.992047
Target:  5'- gGCGGgCCGCCuccGGGcCAGGggCUGGa -3'
miRNA:   3'- -UGCCgGGCGGu--UUUuGUUCaaGACUa -5'
17285 3' -50.7 NC_004367.1 + 130006 0.66 0.992047
Target:  5'- gGCGGgCCGCCuccGGGcCAGGggCUGGa -3'
miRNA:   3'- -UGCCgGGCGGu--UUUuGUUCaaGACUa -5'
17285 3' -50.7 NC_004367.1 + 120882 0.66 0.992047
Target:  5'- gGCGGgCCGCCuccGGGcCAGGggCUGGa -3'
miRNA:   3'- -UGCCgGGCGGu--UUUuGUUCaaGACUa -5'
17285 3' -50.7 NC_004367.1 + 123791 0.66 0.992047
Target:  5'- gGCGGgCCGCCuccGGGcCAGGggCUGGa -3'
miRNA:   3'- -UGCCgGGCGGu--UUUuGUUCaaGACUa -5'
17285 3' -50.7 NC_004367.1 + 126701 0.66 0.992047
Target:  5'- gGCGGgCCGCCuccGGGcCAGGggCUGGa -3'
miRNA:   3'- -UGCCgGGCGGu--UUUuGUUCaaGACUa -5'
17285 3' -50.7 NC_004367.1 + 129610 0.66 0.992047
Target:  5'- gGCGGgCCGCCuccGGGcCAGGggCUGGa -3'
miRNA:   3'- -UGCCgGGCGGu--UUUuGUUCaaGACUa -5'
17285 3' -50.7 NC_004367.1 + 19163 0.66 0.988046
Target:  5'- aACGGCCCaCCAAu-GCAAGgccauaCUGGUu -3'
miRNA:   3'- -UGCCGGGcGGUUuuUGUUCaa----GACUA- -5'
17285 3' -50.7 NC_004367.1 + 5879 0.67 0.984613
Target:  5'- -gGGCCCGCCcagccgcuAAAGACcgguugucuGUUCUGGUc -3'
miRNA:   3'- ugCCGGGCGG--------UUUUUGuu-------CAAGACUA- -5'
17285 3' -50.7 NC_004367.1 + 31370 0.67 0.980479
Target:  5'- gAUGGgCUGCCuGAAACAGGaagcugUCUGAa -3'
miRNA:   3'- -UGCCgGGCGGuUUUUGUUCa-----AGACUa -5'
17285 3' -50.7 NC_004367.1 + 9673 0.68 0.972797
Target:  5'- -gGGCCCaGUCAGAAGCGAGUacaCUGu- -3'
miRNA:   3'- ugCCGGG-CGGUUUUUGUUCAa--GACua -5'
17285 3' -50.7 NC_004367.1 + 27108 0.68 0.971923
Target:  5'- cUGGCCUcgggauguagggaaGCCAAAGACAGGg-CUGGUa -3'
miRNA:   3'- uGCCGGG--------------CGGUUUUUGUUCaaGACUA- -5'
17285 3' -50.7 NC_004367.1 + 70388 0.69 0.942155
Target:  5'- aACGGaa--CCAGAAACGGGUUCUGAUu -3'
miRNA:   3'- -UGCCgggcGGUUUUUGUUCAAGACUA- -5'
17285 3' -50.7 NC_004367.1 + 81816 1.06 0.011038
Target:  5'- aACGGCCCGCCAAAAACAAGUUCUGAUa -3'
miRNA:   3'- -UGCCGGGCGGUUUUUGUUCAAGACUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.