miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17285 5' -51.9 NC_004367.1 + 27282 0.66 0.986269
Target:  5'- -aAUCcuCCGCUcGUCUggUACAGGCCc -3'
miRNA:   3'- gaUAGucGGCGGaCAGAa-GUGUUCGG- -5'
17285 5' -51.9 NC_004367.1 + 57956 0.66 0.978106
Target:  5'- gUGUCGGCCaCCUGgauaCUgCACAccaaauccAGCCa -3'
miRNA:   3'- gAUAGUCGGcGGACa---GAaGUGU--------UCGG- -5'
17285 5' -51.9 NC_004367.1 + 97690 0.66 0.978106
Target:  5'- gCUG-CAGCCGCuCUGUgUUCAUGucCCa -3'
miRNA:   3'- -GAUaGUCGGCG-GACAgAAGUGUucGG- -5'
17285 5' -51.9 NC_004367.1 + 123141 0.67 0.963798
Target:  5'- gUAUCugAGCCGCCaUGUUgcgagcugcugaaagUCACAguuGGCCu -3'
miRNA:   3'- gAUAG--UCGGCGG-ACAGa--------------AGUGU---UCGG- -5'
17285 5' -51.9 NC_004367.1 + 126050 0.67 0.963798
Target:  5'- gUAUCugAGCCGCCaUGUUgcgagcugcugaaagUCACAguuGGCCu -3'
miRNA:   3'- gAUAG--UCGGCGG-ACAGa--------------AGUGU---UCGG- -5'
17285 5' -51.9 NC_004367.1 + 83636 0.68 0.947612
Target:  5'- aCUAUCuccAGCCuGCUUGUCUagGaGAGCCu -3'
miRNA:   3'- -GAUAG---UCGG-CGGACAGAagUgUUCGG- -5'
17285 5' -51.9 NC_004367.1 + 101916 0.68 0.947612
Target:  5'- gUGUCAGCCGUCaaUCUUCuccCAAGUg -3'
miRNA:   3'- gAUAGUCGGCGGacAGAAGu--GUUCGg -5'
17285 5' -51.9 NC_004367.1 + 73336 0.7 0.875996
Target:  5'- ----aAGCCacGCCUGUC-UCAgAGGCCa -3'
miRNA:   3'- gauagUCGG--CGGACAGaAGUgUUCGG- -5'
17285 5' -51.9 NC_004367.1 + 81782 1.13 0.003389
Target:  5'- gCUAUCAGCCGCCUGUCUUCACAAGCCa -3'
miRNA:   3'- -GAUAGUCGGCGGACAGAAGUGUUCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.