miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17287 3' -52.6 NC_004367.1 + 149054 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 149382 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 9347 0.66 0.965987
Target:  5'- uGGCCGCGUCUGaCCA-AAuAACGCUGg -3'
miRNA:   3'- cUCGGCGUGGAC-GGUcUUuUUGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 145122 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 147088 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 146760 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 146433 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 142173 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 142501 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 142828 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 143156 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 143484 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 141518 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 144139 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 144467 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 144794 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 141190 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 145450 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 145777 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 146105 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.