miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17287 3' -52.6 NC_004367.1 + 142173 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 142501 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 142828 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 143156 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 149382 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 149054 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 148726 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 148399 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 148071 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 147416 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 143484 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 143811 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 144139 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 144467 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 144794 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 145122 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 145450 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 145777 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 147743 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 147088 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.