miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17288 5' -46.4 NC_004367.1 + 138077 0.68 0.999242
Target:  5'- -gUUUGACCGGCUu--UUCAauagauaugaUGCAUCu -3'
miRNA:   3'- caAAACUGGUCGGcauAAGU----------ACGUAG- -5'
17288 5' -46.4 NC_004367.1 + 102496 0.68 0.999061
Target:  5'- -gUUUGuCCaAGCCGU-UUCA-GCAUCg -3'
miRNA:   3'- caAAACuGG-UCGGCAuAAGUaCGUAG- -5'
17288 5' -46.4 NC_004367.1 + 96155 0.68 0.999061
Target:  5'- ---aUGGCUAGCCGgUAUUCAgaaAUCa -3'
miRNA:   3'- caaaACUGGUCGGC-AUAAGUacgUAG- -5'
17288 5' -46.4 NC_004367.1 + 132183 0.68 0.999061
Target:  5'- --gUUGcCCugcGCCGU--UCAUGCAUCc -3'
miRNA:   3'- caaAACuGGu--CGGCAuaAGUACGUAG- -5'
17288 5' -46.4 NC_004367.1 + 30336 0.68 0.998845
Target:  5'- ---gUGACaC-GCCGUAUUCAgagGCAUg -3'
miRNA:   3'- caaaACUG-GuCGGCAUAAGUa--CGUAg -5'
17288 5' -46.4 NC_004367.1 + 20564 0.69 0.997922
Target:  5'- ----cGGCCAGCCGUuagCAcagGCAUUu -3'
miRNA:   3'- caaaaCUGGUCGGCAuaaGUa--CGUAG- -5'
17288 5' -46.4 NC_004367.1 + 11427 0.71 0.99094
Target:  5'- -aUUUGGCCAGCgCGUGgugccaagagCAgcgGCGUCa -3'
miRNA:   3'- caAAACUGGUCG-GCAUaa--------GUa--CGUAG- -5'
17288 5' -46.4 NC_004367.1 + 88386 0.74 0.944899
Target:  5'- uGUUUUGACCAGCCGaAUgacacaggUCAUGUg-- -3'
miRNA:   3'- -CAAAACUGGUCGGCaUA--------AGUACGuag -5'
17288 5' -46.4 NC_004367.1 + 58418 0.75 0.917223
Target:  5'- ----aGGCCAGCCGUGacUUUuuuUGCAUCu -3'
miRNA:   3'- caaaaCUGGUCGGCAU--AAGu--ACGUAG- -5'
17288 5' -46.4 NC_004367.1 + 88391 1.11 0.016765
Target:  5'- uGUUUUGACCAGCCGUAUUCAUGCAUCu -3'
miRNA:   3'- -CAAAACUGGUCGGCAUAAGUACGUAG- -5'
17288 5' -46.4 NC_004367.1 + 88529 1.11 0.016765
Target:  5'- uGUUUUGACCAGCCGUAUUCAUGCAUCu -3'
miRNA:   3'- -CAAAACUGGUCGGCAUAAGUACGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.