Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17288 | 5' | -46.4 | NC_004367.1 | + | 138077 | 0.68 | 0.999242 |
Target: 5'- -gUUUGACCGGCUu--UUCAauagauaugaUGCAUCu -3' miRNA: 3'- caAAACUGGUCGGcauAAGU----------ACGUAG- -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 132183 | 0.68 | 0.999061 |
Target: 5'- --gUUGcCCugcGCCGU--UCAUGCAUCc -3' miRNA: 3'- caaAACuGGu--CGGCAuaAGUACGUAG- -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 96155 | 0.68 | 0.999061 |
Target: 5'- ---aUGGCUAGCCGgUAUUCAgaaAUCa -3' miRNA: 3'- caaaACUGGUCGGC-AUAAGUacgUAG- -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 102496 | 0.68 | 0.999061 |
Target: 5'- -gUUUGuCCaAGCCGU-UUCA-GCAUCg -3' miRNA: 3'- caAAACuGG-UCGGCAuAAGUaCGUAG- -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 30336 | 0.68 | 0.998845 |
Target: 5'- ---gUGACaC-GCCGUAUUCAgagGCAUg -3' miRNA: 3'- caaaACUG-GuCGGCAUAAGUa--CGUAg -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 20564 | 0.69 | 0.997922 |
Target: 5'- ----cGGCCAGCCGUuagCAcagGCAUUu -3' miRNA: 3'- caaaaCUGGUCGGCAuaaGUa--CGUAG- -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 11427 | 0.71 | 0.99094 |
Target: 5'- -aUUUGGCCAGCgCGUGgugccaagagCAgcgGCGUCa -3' miRNA: 3'- caAAACUGGUCG-GCAUaa--------GUa--CGUAG- -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 88386 | 0.74 | 0.944899 |
Target: 5'- uGUUUUGACCAGCCGaAUgacacaggUCAUGUg-- -3' miRNA: 3'- -CAAAACUGGUCGGCaUA--------AGUACGuag -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 58418 | 0.75 | 0.917223 |
Target: 5'- ----aGGCCAGCCGUGacUUUuuuUGCAUCu -3' miRNA: 3'- caaaaCUGGUCGGCAU--AAGu--ACGUAG- -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 88391 | 1.11 | 0.016765 |
Target: 5'- uGUUUUGACCAGCCGUAUUCAUGCAUCu -3' miRNA: 3'- -CAAAACUGGUCGGCAUAAGUACGUAG- -5' |
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17288 | 5' | -46.4 | NC_004367.1 | + | 88529 | 1.11 | 0.016765 |
Target: 5'- uGUUUUGACCAGCCGUAUUCAUGCAUCu -3' miRNA: 3'- -CAAAACUGGUCGGCAUAAGUACGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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