miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17289 3' -48.9 NC_004367.1 + 140620 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 143896 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 143569 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 143241 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 142913 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 142586 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 142258 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 141930 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 141603 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 141275 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 140947 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 145207 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 144224 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 144552 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 145862 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 144879 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 146518 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 15366 0.66 0.999378
Target:  5'- cCCCACaaAUUCACGAccgaauuccauACGUGUUUGUGGc -3'
miRNA:   3'- -GGGUGg-UAAGUGUU-----------UGCGCGAAUGCC- -5'
17289 3' -48.9 NC_004367.1 + 145535 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 146190 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.