Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17289 | 3' | -48.9 | NC_004367.1 | + | 144793 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 144466 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 144138 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 143810 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 143483 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 143155 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 142827 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 142500 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 142172 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 141844 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 145776 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 146104 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 146432 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 146759 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 147087 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 147415 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 147742 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 148070 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 148398 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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17289 | 3' | -48.9 | NC_004367.1 | + | 148725 | 0.7 | 0.977733 |
Target: 5'- cCCCGCCGUUCGCcacgcaucauuGAGCaCGgaUugGGa -3' miRNA: 3'- -GGGUGGUAAGUG-----------UUUGcGCgaAugCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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