miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17289 3' -48.9 NC_004367.1 + 145207 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 145535 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 149467 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 149139 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 148811 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 148484 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 148156 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 147828 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 147501 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 147173 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 146845 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 146190 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 145862 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 140620 0.76 0.834463
Target:  5'- gCCCACCGguuccucUCGCGAGCaGCGCgc-CGGg -3'
miRNA:   3'- -GGGUGGUa------AGUGUUUG-CGCGaauGCC- -5'
17289 3' -48.9 NC_004367.1 + 109212 1.15 0.007294
Target:  5'- gCCCACCAUUCACAAACGCGCUUACGGg -3'
miRNA:   3'- -GGGUGGUAAGUGUUUGCGCGAAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.