miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17290 3' -52.7 NC_004367.1 + 115397 0.66 0.980207
Target:  5'- aUGUCCUCAgacCGCGGACAauaaGUCc -3'
miRNA:   3'- aGCAGGGGUacaGCGCCUGUaaa-CAG- -5'
17290 3' -52.7 NC_004367.1 + 22293 0.67 0.966733
Target:  5'- cUGUCUCC---UCaCGGACAUUUGUCc -3'
miRNA:   3'- aGCAGGGGuacAGcGCCUGUAAACAG- -5'
17290 3' -52.7 NC_004367.1 + 22432 0.69 0.904876
Target:  5'- -aGUCCCCGUccCGCGGACAg----- -3'
miRNA:   3'- agCAGGGGUAcaGCGCCUGUaaacag -5'
17290 3' -52.7 NC_004367.1 + 55886 0.69 0.898399
Target:  5'- gCGUCUCC---UCaCGGACAUUUGUCc -3'
miRNA:   3'- aGCAGGGGuacAGcGCCUGUAAACAG- -5'
17290 3' -52.7 NC_004367.1 + 115717 0.7 0.854624
Target:  5'- ---nCCCCGUcUCGCGGACAacUGUCc -3'
miRNA:   3'- agcaGGGGUAcAGCGCCUGUaaACAG- -5'
17290 3' -52.7 NC_004367.1 + 22475 0.78 0.452218
Target:  5'- aCGUCCCCGUccCGCGGACAguaGUCc -3'
miRNA:   3'- aGCAGGGGUAcaGCGCCUGUaaaCAG- -5'
17290 3' -52.7 NC_004367.1 + 22411 0.8 0.380939
Target:  5'- -aGUCCCCGUccCGCGGACAgUUGUCc -3'
miRNA:   3'- agCAGGGGUAcaGCGCCUGUaAACAG- -5'
17290 3' -52.7 NC_004367.1 + 56046 0.8 0.380939
Target:  5'- aCGUCCCCGUccCGCGGACAgUUGUa -3'
miRNA:   3'- aGCAGGGGUAcaGCGCCUGUaAACAg -5'
17290 3' -52.7 NC_004367.1 + 115678 0.81 0.310224
Target:  5'- cUGUCCCCGUcUCGCGGACAacUGUCc -3'
miRNA:   3'- aGCAGGGGUAcAGCGCCUGUaaACAG- -5'
17290 3' -52.7 NC_004367.1 + 56005 0.82 0.303014
Target:  5'- gUUGUCCCCGUccCGCGGACAgUUGUCc -3'
miRNA:   3'- -AGCAGGGGUAcaGCGCCUGUaAACAG- -5'
17290 3' -52.7 NC_004367.1 + 22684 0.83 0.262458
Target:  5'- aCGUCCCCGUccCGCGGACAUUUGcCc -3'
miRNA:   3'- aGCAGGGGUAcaGCGCCUGUAAACaG- -5'
17290 3' -52.7 NC_004367.1 + 56255 0.83 0.262458
Target:  5'- aCGUCCCCGUccCGCGGACAUUUGcCc -3'
miRNA:   3'- aGCAGGGGUAcaGCGCCUGUAAACaG- -5'
17290 3' -52.7 NC_004367.1 + 115741 0.85 0.204803
Target:  5'- aCGUCCCCGUcUCGCGGACAacUGUCc -3'
miRNA:   3'- aGCAGGGGUAcAGCGCCUGUaaACAG- -5'
17290 3' -52.7 NC_004367.1 + 115609 1.09 0.005695
Target:  5'- cUCGUCCCCAUGUCGCGGACAUUUGUCc -3'
miRNA:   3'- -AGCAGGGGUACAGCGCCUGUAAACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.