Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17291 | 3' | -56.3 | NC_004367.1 | + | 22451 | 0.66 | 0.910792 |
Target: 5'- ---nCCCCGUCcCGCGGACAGu---- -3' miRNA: 3'- gacaGGGGCAGaGCGCCUGUUgacag -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 22263 | 0.68 | 0.806092 |
Target: 5'- aCUGUCCgCGggaCGgGGACuACUGUCc -3' miRNA: 3'- -GACAGGgGCagaGCgCCUGuUGACAG- -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 115654 | 0.71 | 0.660404 |
Target: 5'- ---nCCCCGUCcUGCGGACugagggcAGCUGUCc -3' miRNA: 3'- gacaGGGGCAGaGCGCCUG-------UUGACAG- -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 55980 | 0.71 | 0.620722 |
Target: 5'- ---nCCCCGUCcCGCGGACAuCUGa- -3' miRNA: 3'- gacaGGGGCAGaGCGCCUGUuGACag -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 22388 | 0.71 | 0.620722 |
Target: 5'- ---nCCCCGUCcCGCGGACAuCUGa- -3' miRNA: 3'- gacaGGGGCAGaGCGCCUGUuGACag -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 22222 | 0.73 | 0.550094 |
Target: 5'- aUGUCCgCGggaCGgGGACAACUGUCc -3' miRNA: 3'- gACAGGgGCagaGCgCCUGUUGACAG- -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 22432 | 0.75 | 0.418487 |
Target: 5'- -aGUCCCCGUCcCGCGGACAGu---- -3' miRNA: 3'- gaCAGGGGCAGaGCGCCUGUUgacag -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 55835 | 0.75 | 0.409817 |
Target: 5'- aCUGUCCgCGggaCGgGGACAACUGUCc -3' miRNA: 3'- -GACAGGgGCagaGCgCCUGUUGACAG- -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 115607 | 0.76 | 0.401259 |
Target: 5'- -cGUCCCCaUgUCGCGGACAuUUGUCc -3' miRNA: 3'- gaCAGGGGcAgAGCGCCUGUuGACAG- -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 22683 | 0.78 | 0.287261 |
Target: 5'- -cGUCCCCGUCcCGCGGACAuuugcccacguACUGa- -3' miRNA: 3'- gaCAGGGGCAGaGCGCCUGU-----------UGACag -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 56254 | 0.78 | 0.287261 |
Target: 5'- -cGUCCCCGUCcCGCGGACAuuugcccacguACUGa- -3' miRNA: 3'- gaCAGGGGCAGaGCGCCUGU-----------UGACag -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 22474 | 0.8 | 0.226445 |
Target: 5'- -cGUCCCCGUCcCGCGGACAGuaGUCc -3' miRNA: 3'- gaCAGGGGCAGaGCGCCUGUUgaCAG- -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 115740 | 0.82 | 0.172513 |
Target: 5'- -cGUCCCCGUCUCGCGGACAn----- -3' miRNA: 3'- gaCAGGGGCAGAGCGCCUGUugacag -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 56045 | 0.82 | 0.164031 |
Target: 5'- -cGUCCCCGUCcCGCGGACAGUUGUa -3' miRNA: 3'- gaCAGGGGCAGaGCGCCUGUUGACAg -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 22411 | 0.86 | 0.097871 |
Target: 5'- -aGUCCCCGUCcCGCGGACAGUUGUCc -3' miRNA: 3'- gaCAGGGGCAGaGCGCCUGUUGACAG- -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 56004 | 0.88 | 0.071224 |
Target: 5'- uUGUCCCCGUCcCGCGGACAGUUGUCc -3' miRNA: 3'- gACAGGGGCAGaGCGCCUGUUGACAG- -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 115679 | 1.09 | 0.002815 |
Target: 5'- aCUGUCCCCGUCUCGCGGACAACUGUCc -3' miRNA: 3'- -GACAGGGGCAGAGCGCCUGUUGACAG- -5' |
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17291 | 3' | -56.3 | NC_004367.1 | + | 115721 | 1.09 | 0.002815 |
Target: 5'- aCUGUCCCCGUCUCGCGGACAACUGUCc -3' miRNA: 3'- -GACAGGGGCAGAGCGCCUGUUGACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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