miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17291 3' -56.3 NC_004367.1 + 22451 0.66 0.910792
Target:  5'- ---nCCCCGUCcCGCGGACAGu---- -3'
miRNA:   3'- gacaGGGGCAGaGCGCCUGUUgacag -5'
17291 3' -56.3 NC_004367.1 + 22263 0.68 0.806092
Target:  5'- aCUGUCCgCGggaCGgGGACuACUGUCc -3'
miRNA:   3'- -GACAGGgGCagaGCgCCUGuUGACAG- -5'
17291 3' -56.3 NC_004367.1 + 115654 0.71 0.660404
Target:  5'- ---nCCCCGUCcUGCGGACugagggcAGCUGUCc -3'
miRNA:   3'- gacaGGGGCAGaGCGCCUG-------UUGACAG- -5'
17291 3' -56.3 NC_004367.1 + 22388 0.71 0.620722
Target:  5'- ---nCCCCGUCcCGCGGACAuCUGa- -3'
miRNA:   3'- gacaGGGGCAGaGCGCCUGUuGACag -5'
17291 3' -56.3 NC_004367.1 + 55980 0.71 0.620722
Target:  5'- ---nCCCCGUCcCGCGGACAuCUGa- -3'
miRNA:   3'- gacaGGGGCAGaGCGCCUGUuGACag -5'
17291 3' -56.3 NC_004367.1 + 22222 0.73 0.550094
Target:  5'- aUGUCCgCGggaCGgGGACAACUGUCc -3'
miRNA:   3'- gACAGGgGCagaGCgCCUGUUGACAG- -5'
17291 3' -56.3 NC_004367.1 + 22432 0.75 0.418487
Target:  5'- -aGUCCCCGUCcCGCGGACAGu---- -3'
miRNA:   3'- gaCAGGGGCAGaGCGCCUGUUgacag -5'
17291 3' -56.3 NC_004367.1 + 55835 0.75 0.409817
Target:  5'- aCUGUCCgCGggaCGgGGACAACUGUCc -3'
miRNA:   3'- -GACAGGgGCagaGCgCCUGUUGACAG- -5'
17291 3' -56.3 NC_004367.1 + 115607 0.76 0.401259
Target:  5'- -cGUCCCCaUgUCGCGGACAuUUGUCc -3'
miRNA:   3'- gaCAGGGGcAgAGCGCCUGUuGACAG- -5'
17291 3' -56.3 NC_004367.1 + 22683 0.78 0.287261
Target:  5'- -cGUCCCCGUCcCGCGGACAuuugcccacguACUGa- -3'
miRNA:   3'- gaCAGGGGCAGaGCGCCUGU-----------UGACag -5'
17291 3' -56.3 NC_004367.1 + 56254 0.78 0.287261
Target:  5'- -cGUCCCCGUCcCGCGGACAuuugcccacguACUGa- -3'
miRNA:   3'- gaCAGGGGCAGaGCGCCUGU-----------UGACag -5'
17291 3' -56.3 NC_004367.1 + 22474 0.8 0.226445
Target:  5'- -cGUCCCCGUCcCGCGGACAGuaGUCc -3'
miRNA:   3'- gaCAGGGGCAGaGCGCCUGUUgaCAG- -5'
17291 3' -56.3 NC_004367.1 + 115740 0.82 0.172513
Target:  5'- -cGUCCCCGUCUCGCGGACAn----- -3'
miRNA:   3'- gaCAGGGGCAGAGCGCCUGUugacag -5'
17291 3' -56.3 NC_004367.1 + 56045 0.82 0.164031
Target:  5'- -cGUCCCCGUCcCGCGGACAGUUGUa -3'
miRNA:   3'- gaCAGGGGCAGaGCGCCUGUUGACAg -5'
17291 3' -56.3 NC_004367.1 + 22411 0.86 0.097871
Target:  5'- -aGUCCCCGUCcCGCGGACAGUUGUCc -3'
miRNA:   3'- gaCAGGGGCAGaGCGCCUGUUGACAG- -5'
17291 3' -56.3 NC_004367.1 + 56004 0.88 0.071224
Target:  5'- uUGUCCCCGUCcCGCGGACAGUUGUCc -3'
miRNA:   3'- gACAGGGGCAGaGCGCCUGUUGACAG- -5'
17291 3' -56.3 NC_004367.1 + 115679 1.09 0.002815
Target:  5'- aCUGUCCCCGUCUCGCGGACAACUGUCc -3'
miRNA:   3'- -GACAGGGGCAGAGCGCCUGUUGACAG- -5'
17291 3' -56.3 NC_004367.1 + 115721 1.09 0.002815
Target:  5'- aCUGUCCCCGUCUCGCGGACAACUGUCc -3'
miRNA:   3'- -GACAGGGGCAGAGCGCCUGUUGACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.