miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17291 5' -57.7 NC_004367.1 + 115410 0.66 0.836905
Target:  5'- gCGGACAAUaaGUCCCaaUCg-GCGGACa -3'
miRNA:   3'- -GCCUGUUGa-CAGGGgcAGagCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 110553 0.67 0.794484
Target:  5'- aCGGACAcucagGUCCUCGcCUCGCGcaGAUa -3'
miRNA:   3'- -GCCUGUuga--CAGGGGCaGAGCGC--CUG- -5'
17291 5' -57.7 NC_004367.1 + 138545 0.68 0.757969
Target:  5'- uGGGguGC-GUCaCCGUCUCGCGG-Cg -3'
miRNA:   3'- gCCUguUGaCAGgGGCAGAGCGCCuG- -5'
17291 5' -57.7 NC_004367.1 + 22299 0.68 0.729429
Target:  5'- gGGACuACUGUCCgCGggaCGgGGACg -3'
miRNA:   3'- gCCUGuUGACAGGgGCagaGCgCCUG- -5'
17291 5' -57.7 NC_004367.1 + 37464 0.72 0.5507
Target:  5'- uGGGCAAUUGUUgCCCGaaaCGCGGACu -3'
miRNA:   3'- gCCUGUUGACAG-GGGCagaGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 115474 0.74 0.420804
Target:  5'- uGGACAGCUGcCCUCaGUC-CGCaGGACg -3'
miRNA:   3'- gCCUGUUGACaGGGG-CAGaGCG-CCUG- -5'
17291 5' -57.7 NC_004367.1 + 22236 0.75 0.387169
Target:  5'- gGGACAACUGUCCgCGggaCGgGGACu -3'
miRNA:   3'- gCCUGUUGACAGGgGCagaGCgCCUG- -5'
17291 5' -57.7 NC_004367.1 + 55850 0.8 0.196201
Target:  5'- gGGACAACUGUCCgcgggacggguacaaCUGUC-CGCGGGCg -3'
miRNA:   3'- gCCUGUUGACAGG---------------GGCAGaGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 115523 0.66 0.836905
Target:  5'- gGGACAGUUGUCCgCGggaCGgGGACa -3'
miRNA:   3'- gCCUGUUGACAGGgGCagaGCgCCUG- -5'
17291 5' -57.7 NC_004367.1 + 22399 0.92 0.030671
Target:  5'- gCGGACAGUUGUCCCCGUCcCGCGGACa -3'
miRNA:   3'- -GCCUGUUGACAGGGGCAGaGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 22432 0.7 0.630335
Target:  5'- --------aGUCCCCGUCcCGCGGACa -3'
miRNA:   3'- gccuguugaCAGGGGCAGaGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 55987 0.75 0.371029
Target:  5'- ---nCAGUUGUCCCCGUCcCGCGGACa -3'
miRNA:   3'- gccuGUUGACAGGGGCAGaGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 115636 0.78 0.243592
Target:  5'- aGGGCAGCUGUCCacguaccaugcccacUCGUCcccaugUCGCGGACa -3'
miRNA:   3'- gCCUGUUGACAGG---------------GGCAG------AGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 115661 0.8 0.180501
Target:  5'- ---nCAACUGUCCCCGUCcUGCGGACu -3'
miRNA:   3'- gccuGUUGACAGGGGCAGaGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 22693 0.83 0.123853
Target:  5'- cCGGGgGACacGUCCCCGUCcCGCGGACa -3'
miRNA:   3'- -GCCUgUUGa-CAGGGGCAGaGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 56055 0.83 0.123853
Target:  5'- cCGGGgGACacGUCCCCGUCcCGCGGACa -3'
miRNA:   3'- -GCCUgUUGa-CAGGGGCAGaGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 56264 0.83 0.123853
Target:  5'- cCGGGgGACacGUCCCCGUCcCGCGGACa -3'
miRNA:   3'- -GCCUgUUGa-CAGGGGCAGaGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 115728 1.1 0.001927
Target:  5'- gCGGACAACUGUCCCCGUCUCGCGGACa -3'
miRNA:   3'- -GCCUGUUGACAGGGGCAGAGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 115686 1.1 0.001927
Target:  5'- gCGGACAACUGUCCCCGUCUCGCGGACa -3'
miRNA:   3'- -GCCUGUUGACAGGGGCAGAGCGCCUG- -5'
17291 5' -57.7 NC_004367.1 + 22462 0.86 0.075726
Target:  5'- gCGGACAGuaGUCCCCGUCcCGCGGACa -3'
miRNA:   3'- -GCCUGUUgaCAGGGGCAGaGCGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.