Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17292 | 5' | -45.4 | NC_004367.1 | + | 15777 | 0.67 | 0.999843 |
Target: 5'- aUUCUAUUGGUguggGUAACC-GgcGGUg -3' miRNA: 3'- gAGGAUAACCAa---UAUUGGaCauCCAa -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 23321 | 0.72 | 0.986976 |
Target: 5'- uUCCUAUUGGUUccuACCUaUAGGUc -3' miRNA: 3'- gAGGAUAACCAAuauUGGAcAUCCAa -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 56683 | 0.72 | 0.986976 |
Target: 5'- uUCCUAUUGGUUccuACCUaUAGGUc -3' miRNA: 3'- gAGGAUAACCAAuauUGGAcAUCCAa -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 116378 | 0.72 | 0.986976 |
Target: 5'- uUCCUAUUGGUUccuACCUaUAGGUc -3' miRNA: 3'- gAGGAUAACCAAuauUGGAcAUCCAa -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 116438 | 0.73 | 0.978551 |
Target: 5'- uUCCUAUUGGUUA-AACCUuaAGGUc -3' miRNA: 3'- gAGGAUAACCAAUaUUGGAcaUCCAa -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 56743 | 0.73 | 0.978551 |
Target: 5'- uUCCUAUUGGUUA-AACCUuaAGGUc -3' miRNA: 3'- gAGGAUAACCAAUaUUGGAcaUCCAa -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 23381 | 0.73 | 0.978551 |
Target: 5'- uUCCUAUUGGUUA-AACCUuaAGGUc -3' miRNA: 3'- gAGGAUAACCAAUaUUGGAcaUCCAa -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 44114 | 0.73 | 0.980959 |
Target: 5'- -cCCUGUUGGUUAUAACaucuaUGUuGGUg -3' miRNA: 3'- gaGGAUAACCAAUAUUGg----ACAuCCAa -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 72406 | 0.73 | 0.983159 |
Target: 5'- uCUCCUcagaaaguuuauGUUGGUguacAACCUGUAGGg- -3' miRNA: 3'- -GAGGA------------UAACCAaua-UUGGACAUCCaa -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 23260 | 0.96 | 0.161514 |
Target: 5'- gCUCCUAUUGGUUAauACCUGUAGGUUg -3' miRNA: 3'- -GAGGAUAACCAAUauUGGACAUCCAA- -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 56622 | 0.96 | 0.161514 |
Target: 5'- gCUCCUAUUGGUUAauACCUGUAGGUUg -3' miRNA: 3'- -GAGGAUAACCAAUauUGGACAUCCAA- -5' |
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17292 | 5' | -45.4 | NC_004367.1 | + | 116317 | 0.96 | 0.161514 |
Target: 5'- gCUCCUAUUGGUUAauACCUGUAGGUUg -3' miRNA: 3'- -GAGGAUAACCAAUauUGGACAUCCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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