miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17292 5' -45.4 NC_004367.1 + 116317 0.96 0.161514
Target:  5'- gCUCCUAUUGGUUAauACCUGUAGGUUg -3'
miRNA:   3'- -GAGGAUAACCAAUauUGGACAUCCAA- -5'
17292 5' -45.4 NC_004367.1 + 56622 0.96 0.161514
Target:  5'- gCUCCUAUUGGUUAauACCUGUAGGUUg -3'
miRNA:   3'- -GAGGAUAACCAAUauUGGACAUCCAA- -5'
17292 5' -45.4 NC_004367.1 + 23260 0.96 0.161514
Target:  5'- gCUCCUAUUGGUUAauACCUGUAGGUUg -3'
miRNA:   3'- -GAGGAUAACCAAUauUGGACAUCCAA- -5'
17292 5' -45.4 NC_004367.1 + 56743 0.73 0.978551
Target:  5'- uUCCUAUUGGUUA-AACCUuaAGGUc -3'
miRNA:   3'- gAGGAUAACCAAUaUUGGAcaUCCAa -5'
17292 5' -45.4 NC_004367.1 + 23381 0.73 0.978551
Target:  5'- uUCCUAUUGGUUA-AACCUuaAGGUc -3'
miRNA:   3'- gAGGAUAACCAAUaUUGGAcaUCCAa -5'
17292 5' -45.4 NC_004367.1 + 116438 0.73 0.978551
Target:  5'- uUCCUAUUGGUUA-AACCUuaAGGUc -3'
miRNA:   3'- gAGGAUAACCAAUaUUGGAcaUCCAa -5'
17292 5' -45.4 NC_004367.1 + 44114 0.73 0.980959
Target:  5'- -cCCUGUUGGUUAUAACaucuaUGUuGGUg -3'
miRNA:   3'- gaGGAUAACCAAUAUUGg----ACAuCCAa -5'
17292 5' -45.4 NC_004367.1 + 72406 0.73 0.983159
Target:  5'- uCUCCUcagaaaguuuauGUUGGUguacAACCUGUAGGg- -3'
miRNA:   3'- -GAGGA------------UAACCAaua-UUGGACAUCCaa -5'
17292 5' -45.4 NC_004367.1 + 116378 0.72 0.986976
Target:  5'- uUCCUAUUGGUUccuACCUaUAGGUc -3'
miRNA:   3'- gAGGAUAACCAAuauUGGAcAUCCAa -5'
17292 5' -45.4 NC_004367.1 + 56683 0.72 0.986976
Target:  5'- uUCCUAUUGGUUccuACCUaUAGGUc -3'
miRNA:   3'- gAGGAUAACCAAuauUGGAcAUCCAa -5'
17292 5' -45.4 NC_004367.1 + 23321 0.72 0.986976
Target:  5'- uUCCUAUUGGUUccuACCUaUAGGUc -3'
miRNA:   3'- gAGGAUAACCAAuauUGGAcAUCCAa -5'
17292 5' -45.4 NC_004367.1 + 15777 0.67 0.999843
Target:  5'- aUUCUAUUGGUguggGUAACC-GgcGGUg -3'
miRNA:   3'- gAGGAUAACCAa---UAUUGGaCauCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.