Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17293 | 3' | -58 | NC_004367.1 | + | 142902 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 146179 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 145851 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 145524 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 145196 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 144868 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 144541 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 144213 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 143885 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 143558 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 143230 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 149456 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 142575 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 142247 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 141919 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 141592 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 141264 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 140936 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 140609 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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17293 | 3' | -58 | NC_004367.1 | + | 146507 | 0.66 | 0.814116 |
Target: 5'- aGGGGUCCCGCGCcca---CCGGUUCc -3' miRNA: 3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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