miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17293 3' -58 NC_004367.1 + 149456 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 143558 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 143885 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 144213 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 144541 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 144868 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 145196 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 145524 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 145851 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 143230 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 142902 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 142575 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 146507 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 146834 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 140609 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 140936 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 141264 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 141592 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 141919 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5'
17293 3' -58 NC_004367.1 + 142247 0.66 0.814116
Target:  5'- aGGGGUCCCGCGCcca---CCGGUUCc -3'
miRNA:   3'- -UCCUGGGGCGCGaacaagGGCCAAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.