Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17293 | 5' | -60.2 | NC_004367.1 | + | 116439 | 0.66 | 0.731864 |
Target: 5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3' miRNA: 3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 23382 | 0.66 | 0.731864 |
Target: 5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3' miRNA: 3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 56744 | 0.66 | 0.731864 |
Target: 5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3' miRNA: 3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 117333 | 0.66 | 0.712698 |
Target: 5'- gGgGACCUGuaugaggaccaGAACCUGaACUGGGGCg- -3' miRNA: 3'- gCgCUGGAC-----------CUUGGAC-UGGUCCCGgc -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 29502 | 0.68 | 0.614294 |
Target: 5'- aGUGAUUUGGuGACUguuaGACCAGGGUCu -3' miRNA: 3'- gCGCUGGACC-UUGGa---CUGGUCCCGGc -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 45564 | 0.69 | 0.555362 |
Target: 5'- -uCGugUaGGAuuguGCCUGGCCAGGGUCa -3' miRNA: 3'- gcGCugGaCCU----UGGACUGGUCCCGGc -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 141752 | 0.7 | 0.479706 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCg- -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgc -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 22433 | 0.71 | 0.461566 |
Target: 5'- gGCGACCUacauuugggaaGGGGCCgcGGCaUGGGGCCGa -3' miRNA: 3'- gCGCUGGA-----------CCUUGGa-CUG-GUCCCGGC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 56004 | 0.71 | 0.461566 |
Target: 5'- gGCGACCUacauuugggaaGGGGCCgcGGCaUGGGGCCGa -3' miRNA: 3'- gCGCUGGA-----------CCUUGGa-CUG-GUCCCGGC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 143391 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 144374 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 144702 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 145029 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 145357 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 145685 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 143063 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 142080 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 146668 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 146995 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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17293 | 5' | -60.2 | NC_004367.1 | + | 141425 | 0.71 | 0.426414 |
Target: 5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3' miRNA: 3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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