miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17293 5' -60.2 NC_004367.1 + 116439 0.66 0.731864
Target:  5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3'
miRNA:   3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5'
17293 5' -60.2 NC_004367.1 + 23382 0.66 0.731864
Target:  5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3'
miRNA:   3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5'
17293 5' -60.2 NC_004367.1 + 56744 0.66 0.731864
Target:  5'- aGCG-Cg-GGGuCCUGGCCuGGGCUGg -3'
miRNA:   3'- gCGCuGgaCCUuGGACUGGuCCCGGC- -5'
17293 5' -60.2 NC_004367.1 + 117333 0.66 0.712698
Target:  5'- gGgGACCUGuaugaggaccaGAACCUGaACUGGGGCg- -3'
miRNA:   3'- gCgCUGGAC-----------CUUGGAC-UGGUCCCGgc -5'
17293 5' -60.2 NC_004367.1 + 29502 0.68 0.614294
Target:  5'- aGUGAUUUGGuGACUguuaGACCAGGGUCu -3'
miRNA:   3'- gCGCUGGACC-UUGGa---CUGGUCCCGGc -5'
17293 5' -60.2 NC_004367.1 + 45564 0.69 0.555362
Target:  5'- -uCGugUaGGAuuguGCCUGGCCAGGGUCa -3'
miRNA:   3'- gcGCugGaCCU----UGGACUGGUCCCGGc -5'
17293 5' -60.2 NC_004367.1 + 141752 0.7 0.479706
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCg- -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgc -5'
17293 5' -60.2 NC_004367.1 + 22433 0.71 0.461566
Target:  5'- gGCGACCUacauuugggaaGGGGCCgcGGCaUGGGGCCGa -3'
miRNA:   3'- gCGCUGGA-----------CCUUGGa-CUG-GUCCCGGC- -5'
17293 5' -60.2 NC_004367.1 + 56004 0.71 0.461566
Target:  5'- gGCGACCUacauuugggaaGGGGCCgcGGCaUGGGGCCGa -3'
miRNA:   3'- gCGCUGGA-----------CCUUGGa-CUG-GUCCCGGC- -5'
17293 5' -60.2 NC_004367.1 + 143391 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 144374 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 144702 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 145029 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 145357 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 145685 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 143063 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 142080 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 146668 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 146995 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5'
17293 5' -60.2 NC_004367.1 + 141425 0.71 0.426414
Target:  5'- gCGCGGgaccCCUGGAgcggggguggGCgUGGCCGGGGCgGu -3'
miRNA:   3'- -GCGCU----GGACCU----------UGgACUGGUCCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.