miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17294 5' -58.2 NC_004367.1 + 74320 0.73 0.454334
Target:  5'- aUCCCCCUAAGuucCCCACugccgCAGGAC-AUCa -3'
miRNA:   3'- -AGGGGGAUUCu--GGGUG-----GUCCUGgUGG- -5'
17294 5' -58.2 NC_004367.1 + 117179 0.68 0.708198
Target:  5'- gUCCCCaUGAG-CCguCCAGGAaaggCACCa -3'
miRNA:   3'- -AGGGGgAUUCuGGguGGUCCUg---GUGG- -5'
17294 5' -58.2 NC_004367.1 + 129576 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 126667 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 120848 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 129927 0.71 0.568508
Target:  5'- -gCCCCUGGGACCCgguuagGCCGGGAUa--- -3'
miRNA:   3'- agGGGGAUUCUGGG------UGGUCCUGgugg -5'
17294 5' -58.2 NC_004367.1 + 135145 0.66 0.83551
Target:  5'- gCgUCCUGAGcCCCGCaAGcGCCACCu -3'
miRNA:   3'- aGgGGGAUUCuGGGUGgUCcUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 17072 0.66 0.827318
Target:  5'- cCUUUCUAGGAgCCugCAGGAUUGCa -3'
miRNA:   3'- aGGGGGAUUCUgGGugGUCCUGGUGg -5'
17294 5' -58.2 NC_004367.1 + 41439 0.68 0.73731
Target:  5'- gUUCCaCUAuGACCCccGCCAGGgucgcagccaucACCACCg -3'
miRNA:   3'- -AGGGgGAUuCUGGG--UGGUCC------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 488 0.68 0.698358
Target:  5'- cUCCCCggcgGAGACUgAgU-GGACCACCg -3'
miRNA:   3'- aGGGGGa---UUCUGGgUgGuCCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 123757 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 121200 0.71 0.568508
Target:  5'- -gCCCCUGGGACCCgguuagGCCGGGAUa--- -3'
miRNA:   3'- agGGGGAUUCUGGG------UGGUCCUGgugg -5'
17294 5' -58.2 NC_004367.1 + 104064 0.67 0.755352
Target:  5'- uUCCCCCUGcGACCCuuuaaauCCAGccuacguGACCuCUg -3'
miRNA:   3'- -AGGGGGAUuCUGGGu------GGUC-------CUGGuGG- -5'
17294 5' -58.2 NC_004367.1 + 124109 0.71 0.568508
Target:  5'- -gCCCCUGGGACCCgguuagGCCGGGAUa--- -3'
miRNA:   3'- agGGGGAUUCUGGG------UGGUCCUGgugg -5'
17294 5' -58.2 NC_004367.1 + 63277 0.69 0.668552
Target:  5'- aUCCCCaCUGGGugUguauCCAGGGCCAgUg -3'
miRNA:   3'- -AGGGG-GAUUCugGgu--GGUCCUGGUgG- -5'
17294 5' -58.2 NC_004367.1 + 135722 0.67 0.774851
Target:  5'- uUCCCCUUuu--CCCGCUAaGGCCAUCu -3'
miRNA:   3'- -AGGGGGAuucuGGGUGGUcCUGGUGG- -5'
17294 5' -58.2 NC_004367.1 + 11200 0.66 0.843523
Target:  5'- aCCCCCU--GACaCCGCCAacucccCCACCc -3'
miRNA:   3'- aGGGGGAuuCUG-GGUGGUccu---GGUGG- -5'
17294 5' -58.2 NC_004367.1 + 127018 0.71 0.568508
Target:  5'- -gCCCCUGGGACCCgguuagGCCGGGAUa--- -3'
miRNA:   3'- agGGGGAUUCUGGG------UGGUCCUGgugg -5'
17294 5' -58.2 NC_004367.1 + 78611 0.68 0.715049
Target:  5'- aUCCCCC--AGAUuccggCCACCAaguaccugcacuuuGGACCACg -3'
miRNA:   3'- -AGGGGGauUCUG-----GGUGGU--------------CCUGGUGg -5'
17294 5' -58.2 NC_004367.1 + 127635 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.