miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17295 3' -67.1 NC_004367.1 + 121024 0.7 0.221632
Target:  5'- -cGGGGCAgccagccaccgugUCCccagaacccccaagGGGuGGCCGGGUCCCUa -3'
miRNA:   3'- guCCCCGU-------------AGG--------------CCC-UCGGCCCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 124080 0.68 0.324838
Target:  5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3'
miRNA:   3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 116744 0.69 0.261663
Target:  5'- --uGGGCAcccggaaaacCCGGGAGCCuGGGCaCCCg -3'
miRNA:   3'- gucCCCGUa---------GGCCCUCGG-CCCGgGGG- -5'
17295 3' -67.1 NC_004367.1 + 129608 0.7 0.255927
Target:  5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3'
miRNA:   3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 123789 0.7 0.255927
Target:  5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3'
miRNA:   3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 120880 0.7 0.255927
Target:  5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3'
miRNA:   3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 129898 0.68 0.324838
Target:  5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3'
miRNA:   3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 121171 0.68 0.324838
Target:  5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3'
miRNA:   3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 126699 0.7 0.255927
Target:  5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3'
miRNA:   3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 129751 0.7 0.221632
Target:  5'- -cGGGGCAgccagccaccgugUCCccagaacccccaagGGGuGGCCGGGUCCCUa -3'
miRNA:   3'- guCCCCGU-------------AGG--------------CCC-UCGGCCCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 123933 0.7 0.221632
Target:  5'- -cGGGGCAgccagccaccgugUCCccagaacccccaagGGGuGGCCGGGUCCCUa -3'
miRNA:   3'- guCCCCGU-------------AGG--------------CCC-UCGGCCCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 23420 0.67 0.353108
Target:  5'- -uGGGcGguUCUGGGccgcaguaugGGCCGGGCcuggagCCCCa -3'
miRNA:   3'- guCCC-CguAGGCCC----------UCGGCCCG------GGGG- -5'
17295 3' -67.1 NC_004367.1 + 126842 0.7 0.221632
Target:  5'- -cGGGGCAgccagccaccgugUCCccagaacccccaagGGGuGGCCGGGUCCCUa -3'
miRNA:   3'- guCCCCGU-------------AGG--------------CCC-UCGGCCCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 23467 0.68 0.306727
Target:  5'- -cGGGGCuggagccccacggCCGGGccuggagccccacGGCCGGGCCuggaguCCCa -3'
miRNA:   3'- guCCCCGua-----------GGCCC-------------UCGGCCCGG------GGG- -5'
17295 3' -67.1 NC_004367.1 + 102548 0.66 0.398678
Target:  5'- cCAGGGGCAUaaUauGGAugcuCCGGaGCCUCCa -3'
miRNA:   3'- -GUCCCCGUA--GgcCCUc---GGCC-CGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 126989 0.68 0.324838
Target:  5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3'
miRNA:   3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5'
17295 3' -67.1 NC_004367.1 + 116988 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 116962 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 116936 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5'
17295 3' -67.1 NC_004367.1 + 116910 0.67 0.375426
Target:  5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3'
miRNA:   3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.