miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17295 5' -59.2 NC_004367.1 + 55570 0.66 0.750505
Target:  5'- -gGGGUGGCuCUAAUuaUGGGugCCCGuGg -3'
miRNA:   3'- aaCCCGCUG-GGUUG--ACUCugGGGCuC- -5'
17295 5' -59.2 NC_004367.1 + 23690 0.66 0.740942
Target:  5'- -gGGGCuccaGGCCCGGCcgUGGGACUCCa-- -3'
miRNA:   3'- aaCCCG----CUGGGUUG--ACUCUGGGGcuc -5'
17295 5' -59.2 NC_004367.1 + 41860 0.67 0.721547
Target:  5'- cUGGGCcuCCCAACUGGGcUCCCu-- -3'
miRNA:   3'- aACCCGcuGGGUUGACUCuGGGGcuc -5'
17295 5' -59.2 NC_004367.1 + 29975 0.68 0.631566
Target:  5'- -cGGGCGGCUCAAaUGAGccgcauGgCCCGAGu -3'
miRNA:   3'- aaCCCGCUGGGUUgACUC------UgGGGCUC- -5'
17295 5' -59.2 NC_004367.1 + 120788 0.68 0.621462
Target:  5'- -cGGGCuuuaGGCCCAcCUGAGACUUCaGGGa -3'
miRNA:   3'- aaCCCG----CUGGGUuGACUCUGGGG-CUC- -5'
17295 5' -59.2 NC_004367.1 + 123698 0.68 0.621462
Target:  5'- -cGGGCuuuaGGCCCAcCUGAGACUUCaGGGa -3'
miRNA:   3'- aaCCCG----CUGGGUuGACUCUGGGG-CUC- -5'
17295 5' -59.2 NC_004367.1 + 126607 0.68 0.621462
Target:  5'- -cGGGCuuuaGGCCCAcCUGAGACUUCaGGGa -3'
miRNA:   3'- aaCCCG----CUGGGUuGACUCUGGGG-CUC- -5'
17295 5' -59.2 NC_004367.1 + 129516 0.68 0.621462
Target:  5'- -cGGGCuuuaGGCCCAcCUGAGACUUCaGGGa -3'
miRNA:   3'- aaCCCG----CUGGGUuGACUCUGGGG-CUC- -5'
17295 5' -59.2 NC_004367.1 + 20364 0.72 0.386685
Target:  5'- gUGGGCacAUCC-ACUGAGACCCUGAc -3'
miRNA:   3'- aACCCGc-UGGGuUGACUCUGGGGCUc -5'
17295 5' -59.2 NC_004367.1 + 123750 0.87 0.043824
Target:  5'- --cGGUugGACCCAACUGAGACCCCGAGg -3'
miRNA:   3'- aacCCG--CUGGGUUGACUCUGGGGCUC- -5'
17295 5' -59.2 NC_004367.1 + 120840 0.94 0.014039
Target:  5'- -cGGGUugGACCCAACUGAGACCCCGAGg -3'
miRNA:   3'- aaCCCG--CUGGGUUGACUCUGGGGCUC- -5'
17295 5' -59.2 NC_004367.1 + 126659 0.94 0.014039
Target:  5'- -cGGGUugGACCCAACUGAGACCCCGAGg -3'
miRNA:   3'- aaCCCG--CUGGGUUGACUCUGGGGCUC- -5'
17295 5' -59.2 NC_004367.1 + 129568 0.94 0.014039
Target:  5'- -cGGGUugGACCCAACUGAGACCCCGAGg -3'
miRNA:   3'- aaCCCG--CUGGGUUGACUCUGGGGCUC- -5'
17295 5' -59.2 NC_004367.1 + 121321 1.07 0.001902
Target:  5'- uUUGGGCGACCCAACUGAGACCCCGAGg -3'
miRNA:   3'- -AACCCGCUGGGUUGACUCUGGGGCUC- -5'
17295 5' -59.2 NC_004367.1 + 124230 1.07 0.001902
Target:  5'- uUUGGGCGACCCAACUGAGACCCCGAGg -3'
miRNA:   3'- -AACCCGCUGGGUUGACUCUGGGGCUC- -5'
17295 5' -59.2 NC_004367.1 + 127139 1.07 0.001902
Target:  5'- uUUGGGCGACCCAACUGAGACCCCGAGg -3'
miRNA:   3'- -AACCCGCUGGGUUGACUCUGGGGCUC- -5'
17295 5' -59.2 NC_004367.1 + 130048 1.07 0.001902
Target:  5'- uUUGGGCGACCCAACUGAGACCCCGAGg -3'
miRNA:   3'- -AACCCGCUGGGUUGACUCUGGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.