Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17295 | 5' | -59.2 | NC_004367.1 | + | 55570 | 0.66 | 0.750505 |
Target: 5'- -gGGGUGGCuCUAAUuaUGGGugCCCGuGg -3' miRNA: 3'- aaCCCGCUG-GGUUG--ACUCugGGGCuC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 23690 | 0.66 | 0.740942 |
Target: 5'- -gGGGCuccaGGCCCGGCcgUGGGACUCCa-- -3' miRNA: 3'- aaCCCG----CUGGGUUG--ACUCUGGGGcuc -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 41860 | 0.67 | 0.721547 |
Target: 5'- cUGGGCcuCCCAACUGGGcUCCCu-- -3' miRNA: 3'- aACCCGcuGGGUUGACUCuGGGGcuc -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 29975 | 0.68 | 0.631566 |
Target: 5'- -cGGGCGGCUCAAaUGAGccgcauGgCCCGAGu -3' miRNA: 3'- aaCCCGCUGGGUUgACUC------UgGGGCUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 120788 | 0.68 | 0.621462 |
Target: 5'- -cGGGCuuuaGGCCCAcCUGAGACUUCaGGGa -3' miRNA: 3'- aaCCCG----CUGGGUuGACUCUGGGG-CUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 123698 | 0.68 | 0.621462 |
Target: 5'- -cGGGCuuuaGGCCCAcCUGAGACUUCaGGGa -3' miRNA: 3'- aaCCCG----CUGGGUuGACUCUGGGG-CUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 126607 | 0.68 | 0.621462 |
Target: 5'- -cGGGCuuuaGGCCCAcCUGAGACUUCaGGGa -3' miRNA: 3'- aaCCCG----CUGGGUuGACUCUGGGG-CUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 129516 | 0.68 | 0.621462 |
Target: 5'- -cGGGCuuuaGGCCCAcCUGAGACUUCaGGGa -3' miRNA: 3'- aaCCCG----CUGGGUuGACUCUGGGG-CUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 20364 | 0.72 | 0.386685 |
Target: 5'- gUGGGCacAUCC-ACUGAGACCCUGAc -3' miRNA: 3'- aACCCGc-UGGGuUGACUCUGGGGCUc -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 123750 | 0.87 | 0.043824 |
Target: 5'- --cGGUugGACCCAACUGAGACCCCGAGg -3' miRNA: 3'- aacCCG--CUGGGUUGACUCUGGGGCUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 120840 | 0.94 | 0.014039 |
Target: 5'- -cGGGUugGACCCAACUGAGACCCCGAGg -3' miRNA: 3'- aaCCCG--CUGGGUUGACUCUGGGGCUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 126659 | 0.94 | 0.014039 |
Target: 5'- -cGGGUugGACCCAACUGAGACCCCGAGg -3' miRNA: 3'- aaCCCG--CUGGGUUGACUCUGGGGCUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 129568 | 0.94 | 0.014039 |
Target: 5'- -cGGGUugGACCCAACUGAGACCCCGAGg -3' miRNA: 3'- aaCCCG--CUGGGUUGACUCUGGGGCUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 121321 | 1.07 | 0.001902 |
Target: 5'- uUUGGGCGACCCAACUGAGACCCCGAGg -3' miRNA: 3'- -AACCCGCUGGGUUGACUCUGGGGCUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 124230 | 1.07 | 0.001902 |
Target: 5'- uUUGGGCGACCCAACUGAGACCCCGAGg -3' miRNA: 3'- -AACCCGCUGGGUUGACUCUGGGGCUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 127139 | 1.07 | 0.001902 |
Target: 5'- uUUGGGCGACCCAACUGAGACCCCGAGg -3' miRNA: 3'- -AACCCGCUGGGUUGACUCUGGGGCUC- -5' |
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17295 | 5' | -59.2 | NC_004367.1 | + | 130048 | 1.07 | 0.001902 |
Target: 5'- uUUGGGCGACCCAACUGAGACCCCGAGg -3' miRNA: 3'- -AACCCGCUGGGUUGACUCUGGGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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