Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17296 | 3' | -51.3 | NC_004367.1 | + | 984 | 0.69 | 0.943037 |
Target: 5'- cGGGAGUGggGCuGGGuugccUGGGUCUu- -3' miRNA: 3'- -CCCUCACuuCG-CUUuua--ACCCGGGuc -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 7877 | 0.67 | 0.982544 |
Target: 5'- cGGGAccucuaccGUGAGGCGGAAAa-GGcGUCUAGg -3' miRNA: 3'- -CCCU--------CACUUCGCUUUUaaCC-CGGGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 12770 | 0.77 | 0.585179 |
Target: 5'- gGGGAcGUGggGCGggGAaUGuGGUCCAa -3' miRNA: 3'- -CCCU-CACuuCGCuuUUaAC-CCGGGUc -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 22423 | 0.7 | 0.910248 |
Target: 5'- uGGGGGaUGggGCGAccuacauuugGGAagGGGCCgCGGc -3' miRNA: 3'- -CCCUC-ACuuCGCU----------UUUaaCCCGG-GUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 25140 | 0.66 | 0.989897 |
Target: 5'- aGGGAGgugcuUGAAGCuAAAacuuguGUcacacuuguuaaaucUGGGCCCAGu -3' miRNA: 3'- -CCCUC-----ACUUCGcUUU------UA---------------ACCCGGGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 29419 | 0.66 | 0.990674 |
Target: 5'- cGGAcaUGGAGCGAAAccagGGGCCaUAGg -3' miRNA: 3'- cCCUc-ACUUCGCUUUuaa-CCCGG-GUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 31447 | 0.7 | 0.9222 |
Target: 5'- cGGGcGUGAaugaGGCGGAGAUUGGucuucagaGCCCu- -3' miRNA: 3'- -CCCuCACU----UCGCUUUUAACC--------CGGGuc -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 55994 | 0.7 | 0.910248 |
Target: 5'- uGGGGGaUGggGCGAccuacauuugGGAagGGGCCgCGGc -3' miRNA: 3'- -CCCUC-ACuuCGCU----------UUUaaCCCGG-GUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 85432 | 0.66 | 0.986098 |
Target: 5'- uGGGAGgcuaaacUGAGcaucccGUGGAGAUUGGGgCCAu -3' miRNA: 3'- -CCCUC-------ACUU------CGCUUUUAACCCgGGUc -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 86298 | 0.73 | 0.790943 |
Target: 5'- uGGGuG-GAAGCGAAGGUauGGCCCAc -3' miRNA: 3'- -CCCuCaCUUCGCUUUUAacCCGGGUc -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 100056 | 0.69 | 0.947612 |
Target: 5'- aGGGGUGGgcuGGgGAGGAggggUGGGCUgGGg -3' miRNA: 3'- cCCUCACU---UCgCUUUUa---ACCCGGgUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 100092 | 0.69 | 0.947612 |
Target: 5'- aGGGGUGGgcuGGgGAGGAggggUGGGCUgGGg -3' miRNA: 3'- cCCUCACU---UCgCUUUUa---ACCCGGgUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 113425 | 0.66 | 0.989351 |
Target: 5'- --uAGUGAccGCGGAGAUUGGGCUgAa -3' miRNA: 3'- cccUCACUu-CGCUUUUAACCCGGgUc -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 118027 | 0.74 | 0.732009 |
Target: 5'- cGGGAucUGGAGUGAAAucugUGGGCCCu- -3' miRNA: 3'- -CCCUc-ACUUCGCUUUua--ACCCGGGuc -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 121447 | 1.12 | 0.004784 |
Target: 5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3' miRNA: 3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 124356 | 1.12 | 0.004784 |
Target: 5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3' miRNA: 3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 127265 | 1.12 | 0.004784 |
Target: 5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3' miRNA: 3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 130174 | 1.12 | 0.004784 |
Target: 5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3' miRNA: 3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 140766 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 141094 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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