Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17296 | 3' | -51.3 | NC_004367.1 | + | 118027 | 0.74 | 0.732009 |
Target: 5'- cGGGAucUGGAGUGAAAucugUGGGCCCu- -3' miRNA: 3'- -CCCUc-ACUUCGCUUUua--ACCCGGGuc -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 12770 | 0.77 | 0.585179 |
Target: 5'- gGGGAcGUGggGCGggGAaUGuGGUCCAa -3' miRNA: 3'- -CCCU-CACuuCGCuuUUaAC-CCGGGUc -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 127265 | 1.12 | 0.004784 |
Target: 5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3' miRNA: 3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 124356 | 1.12 | 0.004784 |
Target: 5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3' miRNA: 3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 121447 | 1.12 | 0.004784 |
Target: 5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3' miRNA: 3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5' |
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17296 | 3' | -51.3 | NC_004367.1 | + | 130174 | 1.12 | 0.004784 |
Target: 5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3' miRNA: 3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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